Steinrauf L K
Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN 46202-5122, USA.
Acta Crystallogr D Biol Crystallogr. 1998 Sep 1;54(Pt 5):767-80. doi: 10.1107/s0907444997016922.
Hen egg-white lysozyme is one of the most thoroughly studied of enzymes and has been the subject of study by many methods, including X-ray crystallography. The present work extends the X-ray crystallography to higher resolution, includes the positions of the anions, and examines the contacts of the neighbors in greater detail. Data were collected at room temperature on a Rigaku R-axis area detector with rotating-anode X-ray generator to 1.6 A resolution for monoclinic lysozyme iodide at pH 4.0, to 1.8 A for monoclinic lysozyme iodide at pH 8.0, and to 1.1 A resolution for triclinic lysozyme nitrate at pH 4.5. The structures have been refined by SHELX93 with the expected number of anion sites being accounted for. Two regions of the protein have been found to be variable: residues 65-75 and 99-104. Except for 65-75 and 99-104, lysozyme is a very stable molecule with the crystal forms being held together by the electrostatic contacts of the anions and by layers of water molecules. The anion positions can be described as paired half sites, each half being contributed by a different lysozyme molecule. The many different crystal forms of lysozyme may be due to different combinations of the many such half sites on the surface. A hypothesis is presented for lysozyme in the different crystal forms and which may be extended to behavior in solution. Suggestions for future crystallographic research are proposed, involving anions of different shape and charge.
鸡蛋清溶菌酶是研究最为透彻的酶之一,并且一直是多种研究方法的研究对象,包括X射线晶体学。目前的工作将X射线晶体学扩展到更高分辨率,纳入了阴离子的位置,并更详细地研究了相邻分子的接触情况。在室温下,使用Rigaku R轴面积探测器和旋转阳极X射线发生器收集数据,对于pH值为4.0的单斜晶型溶菌酶碘化物,分辨率达到1.6 Å;对于pH值为8.0的单斜晶型溶菌酶碘化物,分辨率达到1.8 Å;对于pH值为4.5的三斜晶型溶菌酶硝酸盐,分辨率达到1.1 Å。结构已通过SHELX93进行精修,预期数量的阴离子位点得到了解释。已发现蛋白质的两个区域存在可变:第65 - 75位残基和第99 - 104位残基。除了65 - 75位残基和99 - 104位残基外,溶菌酶是一个非常稳定的分子,其晶体形式通过阴离子的静电接触和水分子层维系在一起。阴离子位置可描述为成对的半位点,每个半位点由不同的溶菌酶分子贡献。溶菌酶的许多不同晶体形式可能是由于表面上许多此类半位点的不同组合。针对不同晶体形式的溶菌酶提出了一个假设,该假设可能扩展到其在溶液中的行为。提出了未来晶体学研究的建议,涉及不同形状和电荷的阴离子。