荷兰草原土壤中一种未培养优势芽孢杆菌的原位检测
In situ detection of an uncultured predominant bacillus in Dutch grassland soils.
作者信息
Felske A, Akkermans A D, De Vos W M
机构信息
Laboratory of Microbiology, Department of Biomolecular Sciences, Wageningen Agricultural University, 6703 CT Wageningen, The Netherlands.
出版信息
Appl Environ Microbiol. 1998 Nov;64(11):4588-90. doi: 10.1128/AEM.64.11.4588-4590.1998.
Abstract
Uncultured predominant Bacillus ribotype DA001 in Dutch Drentse A grassland soils, as revealed by its 16S rRNA sequence, was detected in soil by fluorescent whole-cell in situ hybridization. A prominent rod-shaped cell type was identified in bacterial suspensions prepared from soil by a multiple 16S rRNA probing approach.
摘要
通过16S rRNA序列鉴定，在荷兰德伦特省草原土壤中未培养的优势芽孢杆菌核糖型DA001，利用荧光全细胞原位杂交技术在土壤中被检测到。通过多重16S rRNA探测方法从土壤制备的细菌悬浮液中鉴定出一种突出的杆状细胞类型。
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本文引用的文献
1
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Appl Environ Microbiol. 1998 Mar;64(3):871-9. doi: 10.1128/AEM.64.3.871-879.1998.
2
Detection and in situ identification of representatives of a widely distributed new bacterial phylum.一种广泛分布的新细菌门代表的检测与原位鉴定
FEMS Microbiol Lett. 1997 Aug 1;153(1):181-90. doi: 10.1111/j.1574-6968.1997.tb10480.x.
3
Molecular microbial diversity of an agricultural soil in Wisconsin.威斯康星州一种农业土壤的分子微生物多样性
Appl Environ Microbiol. 1996 Jun;62(6):1935-43. doi: 10.1128/aem.62.6.1935-1943.1996.
4
Phylogenetic identification and in situ detection of individual microbial cells without cultivation.无需培养的单个微生物细胞的系统发育鉴定和原位检测。
Microbiol Rev. 1995 Mar;59(1):143-69. doi: 10.1128/mr.59.1.143-169.1995.
5
Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology.用于微生物学中确定性、系统发育和环境研究的全细胞荧光寡核苷酸探针检测
J Bacteriol. 1990 Feb;172(2):762-70. doi: 10.1128/jb.172.2.762-770.1990.
6
Detection of micro-organisms in soil after in situ hybridization with rRNA-targeted, fluorescently labelled oligonucleotides.
J Gen Microbiol. 1992 May;138(5):879-87. doi: 10.1099/00221287-138-5-879.
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