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来自嗜热栖热菌和粪产碱杆菌的家族1β-葡萄糖苷酶具有共同的催化机制。

The family 1 beta-glucosidases from Pyrococcus furiosus and Agrobacterium faecalis share a common catalytic mechanism.

作者信息

Bauer M W, Kelly R M

机构信息

Department of Chemical Engineering, North Carolina State University, Raleigh 27695, USA.

出版信息

Biochemistry. 1998 Dec 8;37(49):17170-8. doi: 10.1021/bi9814944.

DOI:10.1021/bi9814944
PMID:9860830
Abstract

Comparisons of catalytic mechanisms have not previously been performed for homologous enzymes from hyperthermophilic and mesophilic sources. Here, the beta-glucosidase from the hyperthermophilic archaeon Pyrococcus furiosus was recombinantly produced in Escherichia coli and shown to have biophyscial and biochemical properties identical to those of the wild-type enzyme. Moreover, the recombinant enzyme was subjected to a detailed kinetic investigation at 95 degreesC to compare its catalytic mechanism to that determined at 37 degreesC for the beta-glucosidase (abg) from the mesophilic bacterium, Agrobacterium faecalis [Kempton, J., and Withers, S. G. (1992) Biochemistry 31, 9961]. These enzymes have amino acid sequences that are 33% identical and have been classified as family 1 glycosyl hydrolases on the basis of amino acid sequence similarities. Both enzymes have similar broad specificities for both sugar and aglycone moieties and exhibit nearly identical pH dependences for their kinetic parameters with several different substrates. Bronsted plots were constructed for bgl at several temperatures using a series of aryl glucoside substrates. These plots were concave downward at all temperatures, indicating that bgl utilized a two-step mechanism similar to that of abg and that the rate-limiting step in this mechanism did not change with temperature for any given aryl glucoside. The Bronsted coefficient for bgl at 95 degreesC (beta1g = -0.7) was identical to that for abg at 37 degreesC and implies that these enzymes utilize nearly identical transition states, at least in regard to charge accumulation on the departing glycosidic oxygen. In addition, a high correlation coefficient (rho = 0.97) for the linear free energy relationship between these two enzymes and similar inhibition constants for these two enzymes with several ground state and transition state analogue inhibitors further indicate that these enzymes stabilize similar transition states. The mechanistic similarities between these two enzymes are noteworthy in light of the large difference in their temperature optima. This suggests that, in the presumed evolution that occurred between the hyperthermophilic archaeal enzyme and the mesophilic bacterial enzyme, structural modifications must have been selected which maintained the integrity of the active site structure and, therefore, the specificity of transition state interactions, while adapting the overall protein structure to permit function at the appropriate temperature.

摘要

此前尚未对来自嗜热菌和嗜温菌的同源酶的催化机制进行比较。在此,嗜热古菌激烈火球菌的β-葡萄糖苷酶在大肠杆菌中重组表达,并显示出与野生型酶相同的生物物理和生化特性。此外,对重组酶在95℃下进行了详细的动力学研究,以将其催化机制与嗜温菌粪产碱杆菌的β-葡萄糖苷酶(abg)在37℃下所确定的催化机制进行比较[肯普顿,J.,和威瑟斯,S.G.(1992年)《生物化学》31卷,9961页]。这些酶的氨基酸序列有33%相同,并且基于氨基酸序列相似性被归类为1家族糖基水解酶。两种酶对糖和糖苷配基部分都有相似的广泛特异性,并且对几种不同底物的动力学参数表现出几乎相同的pH依赖性。使用一系列芳基葡萄糖苷底物在几个温度下为bgl构建了布朗斯特图。这些图在所有温度下都是向下凹的,表明bgl利用了与abg相似的两步机制,并且对于任何给定的芳基葡萄糖苷,该机制中的限速步骤不会随温度变化。bgl在95℃时的布朗斯特系数(β1g = -0.7)与abg在37℃时的相同,这意味着这些酶利用了几乎相同的过渡态,至少在离去糖苷氧上的电荷积累方面是这样。此外,这两种酶之间线性自由能关系的高相关系数(ρ = 0.97)以及这两种酶与几种基态和过渡态类似物抑制剂的相似抑制常数进一步表明这些酶稳定相似的过渡态。鉴于这两种酶的最适温度有很大差异,它们之间的机制相似性值得注意。这表明,在嗜热古菌酶和嗜温菌酶之间可能发生的进化过程中,必定选择了结构修饰,这些修饰维持了活性位点结构的完整性,因此也维持了过渡态相互作用的特异性,同时使整体蛋白质结构适应在适当温度下发挥功能。

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