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1999年瑞士二维聚丙烯酰胺凝胶电泳数据库更新

The 1999 SWISS-2DPAGE database update.

作者信息

Hoogland C, Sanchez J C, Tonella L, Binz P A, Bairoch A, Hochstrasser D F, Appel R D

机构信息

Swiss Institute of Bioinformatics, 1 rue Michel-Servet, CH-1211 Genève 4, Switzerland.

出版信息

Nucleic Acids Res. 2000 Jan 1;28(1):286-8. doi: 10.1093/nar/28.1.286.

Abstract

SWISS-2DPAGE (http://www.expasy.ch/ch2d/ ) is an annotated two-dimensional polyacrylamide gel electro-phoresis (2-DE) database established in 1993. The current release contains 24 reference maps from human and mouse biological samples, as well as from Saccharomyces cerevisiae, Escherichia coli and Dictyostelium discoideum origin. These reference maps have now 2824 identified spots, corresponding to 614 separate protein entries in the database, in addition to virtual entries for each SWISS-PROT sequence or any user-entered amino acids sequence. Last year improvements in the SWISS-2DPAGE database are as follows: three new maps have been created and several others have been updated; cross-references to newly built federated 2-DE databases have been added; new functions to access the data have been provided through the ExPASy proteomics server.

摘要

SWISS-2DPAGE(http://www.expasy.ch/ch2d/ )是一个于1993年建立的注释二维聚丙烯酰胺凝胶电泳(2-DE)数据库。当前版本包含来自人类和小鼠生物样本以及酿酒酵母、大肠杆菌和盘基网柄菌来源的24张参考图谱。这些参考图谱现在有2824个已识别的斑点,对应于数据库中的614个独立蛋白质条目,此外还有每个SWISS-PROT序列或任何用户输入的氨基酸序列的虚拟条目。去年SWISS-2DPAGE数据库的改进如下:创建了三张新图谱,其他几张也已更新;添加了与新构建的联合2-DE数据库的交叉引用;通过ExPASy蛋白质组学服务器提供了访问数据的新功能。

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本文引用的文献

1
Mapping and identification of interferon gamma-regulated HeLa cell proteins separated by immobilized pH gradient two-dimensional gel electrophoresis.
Electrophoresis. 1999 Apr-May;20(4-5):984-93. doi: 10.1002/(SICI)1522-2683(19990101)20:4/5<984::AID-ELPS984>3.0.CO;2-R.
3
The PROSITE database, its status in 1999.
Nucleic Acids Res. 1999 Jan 1;27(1):215-9. doi: 10.1093/nar/27.1.215.
4
GenBank.
Nucleic Acids Res. 1999 Jan 1;27(1):12-7. doi: 10.1093/nar/27.1.12.
5
Protein expression profiles in human breast ductal carcinoma and histologically normal tissue.
Electrophoresis. 1997 Dec;18(15):2832-41. doi: 10.1002/elps.1150181519.
6
HSC-2DPAGE and the two-dimensional gel electrophoresis database of dog heart proteins.
Electrophoresis. 1997 Dec;18(15):2795-802. doi: 10.1002/elps.1150181514.
8
Escherichia coli proteome analysis using the gene-protein database.
Electrophoresis. 1997 Aug;18(8):1243-51. doi: 10.1002/elps.1150180805.
10
Yeast Protein database (YPD): a database for the complete proteome of Saccharomyces cerevisiae.
Nucleic Acids Res. 1997 Jan 1;25(1):57-62. doi: 10.1093/nar/25.1.57.

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