DIP：相互作用蛋白质数据库。
DIP: the database of interacting proteins.
作者信息
Xenarios I, Rice D W, Salwinski L, Baron M K, Marcotte E M, Eisenberg D
机构信息
UCLA-DOE Laboratory of Structural Biology, Molecular Biology Institute, UCLA, Los Angeles, CA 90095-1570, USA.
出版信息
Nucleic Acids Res. 2000 Jan 1;28(1):289-91. doi: 10.1093/nar/28.1.289.
Abstract
The Database of Interacting Proteins (DIP; http://dip.doe-mbi.ucla.edu) is a database that documents experimentally determined protein-protein interactions. This database is intended to provide the scientific community with a comprehensive and integrated tool for browsing and efficiently extracting information about protein interactions and interaction networks in biological processes. Beyond cataloging details of protein-protein interactions, the DIP is useful for understanding protein function and protein-protein relationships, studying the properties of networks of interacting proteins, benchmarking predictions of protein-protein interactions, and studying the evolution of protein-protein interactions.
相似文献
1
DIP: the database of interacting proteins.DIP：相互作用蛋白质数据库。
Nucleic Acids Res. 2000 Jan 1;28(1):289-91. doi: 10.1093/nar/28.1.289.
2
DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions.DIP，即相互作用蛋白质数据库：一种用于研究蛋白质相互作用细胞网络的研究工具。
Nucleic Acids Res. 2002 Jan 1;30(1):303-5. doi: 10.1093/nar/30.1.303.
3
DIP: The Database of Interacting Proteins: 2001 update.DIP：相互作用蛋白质数据库：2001年更新版。
Nucleic Acids Res. 2001 Jan 1;29(1):239-41. doi: 10.1093/nar/29.1.239.
4
The Database of Interacting Proteins: 2004 update.相互作用蛋白质数据库：2004年更新版。
Nucleic Acids Res. 2004 Jan 1;32(Database issue):D449-51. doi: 10.1093/nar/gkh086.
5
The MiSink Plugin: Cytoscape as a graphical interface to the Database of Interacting Proteins.MiSink插件：以Cytoscape作为蛋白质相互作用数据库的图形界面
Bioinformatics. 2007 Aug 15;23(16):2193-5. doi: 10.1093/bioinformatics/btm304. Epub 2007 Jun 6.
6
3D-interologs: an evolution database of physical protein- protein interactions across multiple genomes.3D-interologs：一个跨多个基因组的物理蛋白质-蛋白质相互作用的进化数据库。
BMC Genomics. 2010 Dec 1;11 Suppl 3(Suppl 3):S7. doi: 10.1186/1471-2164-11-S3-S7.
7
Prolinks: a database of protein functional linkages derived from coevolution.Prolinks：一个源自协同进化的蛋白质功能联系数据库。
Genome Biol. 2004;5(5):R35. doi: 10.1186/gb-2004-5-5-r35. Epub 2004 Apr 16.
8
Protein interactions: two methods for assessment of the reliability of high throughput observations.蛋白质相互作用：评估高通量观察结果可靠性的两种方法。
Mol Cell Proteomics. 2002 May;1(5):349-56. doi: 10.1074/mcp.m100037-mcp200.
9
NPInter: the noncoding RNAs and protein related biomacromolecules interaction database.NPInter：非编码RNA与蛋白质相关生物大分子相互作用数据库。
Nucleic Acids Res. 2006 Jan 1;34(Database issue):D150-2. doi: 10.1093/nar/gkj025.
10
PIPs: human protein-protein interaction prediction database.PIPs：人类蛋白质-蛋白质相互作用预测数据库。
Nucleic Acids Res. 2009 Jan;37(Database issue):D651-6. doi: 10.1093/nar/gkn870. Epub 2008 Nov 6.
引用本文的文献
1
Unravelling the human taste receptor interactome: machine learning and molecular modelling insights into protein-protein interactions.解析人类味觉受体相互作用组：机器学习与蛋白质-蛋白质相互作用的分子建模见解
NPJ Sci Food. 2025 Jul 1;9(1):113. doi: 10.1038/s41538-025-00478-9.
2
Prioritizing disease-associated missense variants with chemoproteomic-detected amino acids.利用化学蛋白质组学检测的氨基酸对疾病相关错义变体进行优先级排序。
Am J Hum Genet. 2025 Jul 3;112(7):1649-1663. doi: 10.1016/j.ajhg.2025.04.017. Epub 2025 May 23.
3
Natural Language Processing Methods for the Study of Protein-Ligand Interactions.用于蛋白质-配体相互作用研究的自然语言处理方法
J Chem Inf Model. 2025 Mar 10;65(5):2191-2213. doi: 10.1021/acs.jcim.4c01907. Epub 2025 Feb 24.
4
Leveraging prior knowledge to infer gene regulatory networks from single-cell RNA-sequencing data.利用先验知识从单细胞RNA测序数据推断基因调控网络。
Mol Syst Biol. 2025 Mar;21(3):214-230. doi: 10.1038/s44320-025-00088-3. Epub 2025 Feb 12.
5
Novel artificial intelligence-based identification of drug-gene-disease interaction using protein-protein interaction.基于蛋白质-蛋白质相互作用的新型人工智能药物-基因-疾病相互作用识别
BMC Bioinformatics. 2024 Dec 18;25(1):377. doi: 10.1186/s12859-024-06009-9.
6
State of the interactomes: an evaluation of molecular networks for generating biological insights.相互作用组的现状：对用于产生生物学见解的分子网络的评估。
Mol Syst Biol. 2025 Jan;21(1):1-29. doi: 10.1038/s44320-024-00077-y. Epub 2024 Dec 9.
7
Natural Language Processing Methods for the Study of Protein-Ligand Interactions.用于研究蛋白质-配体相互作用的自然语言处理方法
ArXiv. 2024 Oct 17:arXiv:2409.13057v2.
8
Software and Databases for Protein-Protein Docking.蛋白质对接的软件和数据库。
Methods Mol Biol. 2024;2780:129-138. doi: 10.1007/978-1-0716-3985-6_8.
9
Advances in Integrated Multi-omics Analysis for Drug-Target Identification.整合多组学分析在药物靶点识别中的进展。
Biomolecules. 2024 Jun 14;14(6):692. doi: 10.3390/biom14060692.
10
A comprehensive review of protein-centric predictors for biomolecular interactions: from proteins to nucleic acids and beyond.蛋白质中心预测因子在生物分子相互作用研究中的综合综述：从蛋白质到核酸及其他。
Brief Bioinform. 2024 Mar 27;25(3). doi: 10.1093/bib/bbae162.
本文引用的文献
1
Automatic extraction of biological information from scientific text: protein-protein interactions.从科学文本中自动提取生物信息：蛋白质-蛋白质相互作用
Proc Int Conf Intell Syst Mol Biol. 1999:60-7.
2
Detecting protein function and protein-protein interactions from genome sequences.从基因组序列中检测蛋白质功能和蛋白质-蛋白质相互作用。
Science. 1999 Jul 30;285(5428):751-3. doi: 10.1126/science.285.5428.751.
3
A database for cell signaling networks.一个用于细胞信号网络的数据库。
J Comput Biol. 1998 Winter;5(4):747-54. doi: 10.1089/cmb.1998.5.747.
4
Grasping at molecular interactions and genetic networks in Drosophila melanogaster using FlyNets, an Internet database.利用互联网数据库FlyNets掌握黑腹果蝇中的分子相互作用和基因网络。
Nucleic Acids Res. 1999 Jan 1;27(1):89-94. doi: 10.1093/nar/27.1.89.
5
The Yeast Proteome Database (YPD): a model for the organization and presentation of genome-wide functional data.酵母蛋白质组数据库（YPD）：全基因组功能数据组织与呈现的模型。
Nucleic Acids Res. 1999 Jan 1;27(1):69-73. doi: 10.1093/nar/27.1.69.
6
The PIR-International Protein Sequence Database.PIR国际蛋白质序列数据库。
Nucleic Acids Res. 1999 Jan 1;27(1):39-43. doi: 10.1093/nar/27.1.39.
7
Protein binding and signaling properties of RIN1 suggest a unique effector function.RIN1的蛋白质结合和信号传导特性表明其具有独特的效应器功能。
Proc Natl Acad Sci U S A. 1997 May 13;94(10):4954-9. doi: 10.1073/pnas.94.10.4954.
8
Recent changes in the GenBank On-line Service.GenBank在线服务的近期变化。
Nucleic Acids Res. 1990 Mar 25;18(6):1517-20. doi: 10.1093/nar/18.6.1517.
Zotero 插件