Repbase更新：一个关于重复元件的数据库及电子期刊。 - Suppr

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Repbase update: a database and an electronic journal of repetitive elements.

作者信息

Jurka J

机构信息

Genetic Information Research Institute, 1170 Morse Avenue, Sunnyvale, CA 94089-1605, USA.

出版信息

Trends Genet. 2000 Sep;16(9):418-20. doi: 10.1016/s0168-9525(00)02093-x.

DOI:10.1016/s0168-9525(00)02093-x

PMID:10973072

Abstract

摘要

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Repbase update: a database and an electronic journal of repetitive elements.

作者信息

Jurka J

机构信息

Genetic Information Research Institute, 1170 Morse Avenue, Sunnyvale, CA 94089-1605, USA.

出版信息

Trends Genet. 2000 Sep;16(9):418-20. doi: 10.1016/s0168-9525(00)02093-x.

DOI:10.1016/s0168-9525(00)02093-x

PMID:10973072

Abstract

摘要

相似文献

Repbase update: a database and an electronic journal of repetitive elements.

Trends Genet. 2000 Sep;16(9):418-20. doi: 10.1016/s0168-9525(00)02093-x.

Repbase Update, a database of eukaryotic repetitive elements.

Cytogenet Genome Res. 2005;110(1-4):462-7. doi: 10.1159/000084979.

Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor.

BMC Bioinformatics. 2006 Oct 25;7:474. doi: 10.1186/1471-2105-7-474.

Repbase Update, a database of repetitive elements in eukaryotic genomes.

Mob DNA. 2015 Jun 2;6:11. doi: 10.1186/s13100-015-0041-9. eCollection 2015.

Database of repetitive elements in complete genomes and data mining using transcription factor binding sites.

IEEE Trans Inf Technol Biomed. 2003 Jun;7(2):93-100. doi: 10.1109/titb.2003.811878.

PlanTE-MIR DB: a database for transposable element-related microRNAs in plant genomes.

Funct Integr Genomics. 2016 May;16(3):235-42. doi: 10.1007/s10142-016-0480-5. Epub 2016 Feb 18.

UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. Update 2002.

Nucleic Acids Res. 2002 Jan 1;30(1):335-40. doi: 10.1093/nar/30.1.335.

WindowMasker: window-based masker for sequenced genomes.

Bioinformatics. 2006 Jan 15;22(2):134-41. doi: 10.1093/bioinformatics/bti774. Epub 2005 Nov 15.

A transposon-based strategy for sequencing repetitive DNA in eukaryotic genomes.

Genome Res. 1997 May;7(5):551-63. doi: 10.1101/gr.7.5.551.

DNACompress: fast and effective DNA sequence compression.

Bioinformatics. 2002 Dec;18(12):1696-8. doi: 10.1093/bioinformatics/18.12.1696.

引用本文的文献

Cell-free DNA as a potential alternative to genomic DNA in genetic studies.

NAR Genom Bioinform. 2025 Sep 9;7(3):lqaf119. doi: 10.1093/nargab/lqaf119. eCollection 2025 Sep.

Chromosome-scale genome assembly of Helcystogramma triannulella (Lepidoptera: Gelechiidae).

Sci Data. 2025 Sep 1;12(1):1525. doi: 10.1038/s41597-025-05850-8.

Footprints of Worldwide Adaptation in Structured Populations of Drosophila melanogaster Through the Expanded DEST 2.0 Genomic Resource.

Mol Biol Evol. 2025 Jul 30;42(8). doi: 10.1093/molbev/msaf132.

Chromosome-level genome assembly of the Phoxinus lagowskii.

Sci Data. 2025 Aug 11;12(1):1400. doi: 10.1038/s41597-025-05779-y.

The telomere-to-telomere chromosome-scale genome assembly of Acremonium chrysogenum.

Sci Data. 2025 Aug 7;12(1):1378. doi: 10.1038/s41597-025-05645-x.

Expression of LTR and LINE1 transposable elements defines atypical teratoid/rhabdoid tumor subtypes.

Acta Neuropathol Commun. 2025 Jul 22;13(1):159. doi: 10.1186/s40478-025-02078-w.

analysis of promoters predicts conserved and human specific regulators of adipocyte thermogenesis.

iScience. 2025 Jun 21;28(7):112969. doi: 10.1016/j.isci.2025.112969. eCollection 2025 Jul 18.

Integrated genomic analysis and CRISPRi implicates in Alzheimer's disease risk.

medRxiv. 2025 Jun 26:2025.06.25.25328705. doi: 10.1101/2025.06.25.25328705.

mtgRNA-db: An annotated database of multi-target CRISPR-Cas9 guide-RNAs in the human genome.

bioRxiv. 2025 May 10:2025.05.07.652656. doi: 10.1101/2025.05.07.652656.

The first high-quality chromosome-level genome of Parupeneus biaculeatus using HiFi and Hi-C data.

Sci Data. 2025 Jun 20;12(1):1042. doi: 10.1038/s41597-025-05226-y.