Powers R A, Caselli E, Focia P J, Prati F, Shoichet B K
Department of Molecular Pharmacology and Biological Chemistry, Northwestern University, 303 East Chicago Avenue, Chicago, Illinois 60611, USA.
Biochemistry. 2001 Aug 7;40(31):9207-14. doi: 10.1021/bi0109358.
Third-generation cephalosporins are widely used beta-lactam antibiotics that resist hydrolysis by beta-lactamases. Recently, mutant beta-lactamases that rapidly inactivate these drugs have emerged. To investigate why third-generation cephalosporins are relatively stable to wild-type class C beta-lactamases and how mutant enzymes might overcome this, the structures of the class C beta-lactamase AmpC in complex with the third-generation cephalosporin ceftazidime and with a transition-state analogue of ceftazidime were determined by X-ray crystallography to 2.0 and 2.3 A resolution, respectively. Comparison of the acyl-enzyme structures of ceftazidime and loracarbef, a beta-lactam substrate, reveals that the conformation of ceftazidime in the active site differs from that of substrates. Comparison of the structures of the acyl-enzyme intermediate and the transition-state analogue suggests that ceftazidime blocks formation of the tetrahedral transition state, explaining why it is an inhibitor of AmpC. Ceftazidime cannot adopt a conformation competent for catalysis due to steric clashes that would occur with conserved residues Val211 and Tyr221. The X-ray crystal structure of the mutant beta-lactamase GC1, which has improved activity against third-generation cephalosporins, suggests that a tandem tripeptide insertion in the Omega loop, which contains Val211, has caused a shift of this residue and also of Tyr221 that would allow ceftazidime and other third-generation cephalosporins to adopt a more catalytically competent conformation. These structural differences may explain the extended spectrum activity of GC1 against this class of cephalosporins. In addition, the complexed structure of the transition-state analogue inhibitor (K(i) 20 nM) with AmpC reveals potential opportunities for further inhibitor design.
第三代头孢菌素是广泛使用的β-内酰胺抗生素,能够抵抗β-内酰胺酶的水解作用。最近,出现了能使这些药物迅速失活的突变β-内酰胺酶。为了研究第三代头孢菌素对野生型C类β-内酰胺酶相对稳定的原因,以及突变酶如何克服这一点,通过X射线晶体学分别以2.0 Å和2.3 Å的分辨率测定了C类β-内酰胺酶AmpC与第三代头孢菌素头孢他啶以及头孢他啶过渡态类似物形成的复合物的结构。头孢他啶和β-内酰胺底物氯碳头孢的酰基酶结构比较表明,头孢他啶在活性位点的构象与底物不同。酰基酶中间体和过渡态类似物的结构比较表明,头孢他啶会阻碍四面体过渡态的形成,这就解释了它为何是AmpC的抑制剂。由于与保守残基Val211和Tyr221会发生空间冲突,头孢他啶无法采取适合催化的构象。对第三代头孢菌素有更高活性 的突变β-内酰胺酶GC1的X射线晶体结构表明,在包含Val211的Ω环中有一个串联三肽插入,导致该残基以及Tyr221发生了位移,从而使头孢他啶和其他第三代头孢菌素能够采取更适合催化的构象。这些结构差异可能解释了GC1对这类头孢菌素的广谱活性。此外,过渡态类似物抑制剂(K(i) 20 nM)与AmpC的复合物结构揭示了进一步进行抑制剂设计的潜在机会。