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无似然马尔可夫链蒙特卡罗方法。

Markov chain Monte Carlo without likelihoods.

作者信息

Marjoram Paul, Molitor John, Plagnol Vincent, Tavare Simon

机构信息

Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, CA 90089, USA.

出版信息

Proc Natl Acad Sci U S A. 2003 Dec 23;100(26):15324-8. doi: 10.1073/pnas.0306899100. Epub 2003 Dec 8.

Abstract

Many stochastic simulation approaches for generating observations from a posterior distribution depend on knowing a likelihood function. However, for many complex probability models, such likelihoods are either impossible or computationally prohibitive to obtain. Here we present a Markov chain Monte Carlo method for generating observations from a posterior distribution without the use of likelihoods. It can also be used in frequentist applications, in particular for maximum-likelihood estimation. The approach is illustrated by an example of ancestral inference in population genetics. A number of open problems are highlighted in the discussion.

摘要

许多用于从后验分布生成观测值的随机模拟方法都依赖于知道似然函数。然而,对于许多复杂的概率模型,获得这样的似然函数要么是不可能的,要么在计算上是令人望而却步的。在此,我们提出一种马尔可夫链蒙特卡罗方法,用于在不使用似然函数的情况下从后验分布生成观测值。它也可用于频率论应用,特别是用于最大似然估计。通过群体遗传学中祖先推断的一个例子来说明该方法。讨论中强调了一些未解决的问题。

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本文引用的文献

1
Approximate Bayesian computation in population genetics.群体遗传学中的近似贝叶斯计算
Genetics. 2002 Dec;162(4):2025-35. doi: 10.1093/genetics/162.4.2025.
3
The age of a unique event polymorphism.独特事件多态性的时代。
Genetics. 2000 Sep;156(1):401-9. doi: 10.1093/genetics/156.1.401.
5
Inference of population history using a likelihood approach.使用似然法推断群体历史。
Genetics. 1998 Jul;149(3):1539-46. doi: 10.1093/genetics/149.3.1539.
6
Inferring coalescence times from DNA sequence data.从DNA序列数据推断合并时间。
Genetics. 1997 Feb;145(2):505-18. doi: 10.1093/genetics/145.2.505.
7
Estimating the age of the common ancestor of a sample of DNA sequences.估计DNA序列样本共同祖先的年龄。
Mol Biol Evol. 1997 Feb;14(2):195-9. doi: 10.1093/oxfordjournals.molbev.a025753.

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