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蛋白质和肽的水合动力学。

Dynamics of protein and peptide hydration.

作者信息

Modig Kristofer, Liepinsh Edvards, Otting Gottfried, Halle Bertil

机构信息

Department of Biophysical Chemistry, Lund University, SE-22100 Lund, Sweden.

出版信息

J Am Chem Soc. 2004 Jan 14;126(1):102-14. doi: 10.1021/ja038325d.

Abstract

Biological processes often involve the surfaces of proteins, where the structural and dynamic properties of the aqueous solvent are modified. Information about the dynamics of protein hydration can be obtained by measuring the magnetic relaxation dispersion (MRD) of the water (2)H and (17)O nuclei or by recording the nuclear Overhauser effect (NOE) between water and protein protons. Here, we use the MRD method to study the hydration of the cyclic peptide oxytocin and the globular protein BPTI in deeply supercooled solutions. The results provide a detailed characterization of water dynamics in the hydration layer at the surface of these biomolecules. More than 95% of the water molecules in contact with the biomolecular surface are found to be no more than two-fold motionally retarded as compared to bulk water. In contrast to small nonpolar molecules, the retardation factor for BPTI showed little or no temperature dependence, suggesting that the exposed nonpolar residues do not induce clathrate-like hydrophobic hydration structures. New NOE data for oxytocin and published NOE data for BPTI were analyzed, and a mutually consistent interpretation of MRD and NOE results was achieved with the aid of a new theory of intermolecular dipolar relaxation that accounts explicitly for the dynamic perturbation at the biomolecular surface. The analysis indicates that water-protein NOEs are dominated by long-range dipolar couplings to bulk water, unless the monitored protein proton is near a partly or fully buried hydration site where the water molecule has a long residence time.

摘要

生物过程通常涉及蛋白质表面,在该表面水溶剂的结构和动力学性质会发生改变。有关蛋白质水合动力学的信息可以通过测量水的(2)H和(17)O核的磁弛豫色散(MRD),或通过记录水与蛋白质质子之间的核Overhauser效应(NOE)来获得。在此,我们使用MRD方法研究深度过冷溶液中环肽催产素和球状蛋白BPTI的水合作用。结果详细表征了这些生物分子表面水合层中的水动力学。发现与生物分子表面接触的水分子中超过95%与本体水相比,运动迟缓不超过两倍。与小的非极性分子不同,BPTI的迟缓因子几乎没有或没有温度依赖性,这表明暴露的非极性残基不会诱导笼形疏水水合结构。分析了催产素的新NOE数据和已发表的BPTI的NOE数据,并借助一种新的分子间偶极弛豫理论实现了对MRD和NOE结果的相互一致解释,该理论明确考虑了生物分子表面的动态扰动。分析表明,除非监测的蛋白质质子靠近部分或完全埋藏的水合位点,即水分子具有较长停留时间的位点,否则水 - 蛋白质NOE主要由与本体水的长程偶极耦合主导。

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