Periole Xavier, Ceruso Marc A, Mehler Ernest L
Department of Physiology and Biophysics, Box 1218, Mount Sinai School of Medicine, One Gustave L. Levy Place, New York, New York 10029, USA.
Biochemistry. 2004 Jun 8;43(22):6858-64. doi: 10.1021/bi049949e.
Glutamic acid E134 in rhodopsin is part of a highly conserved triad, D(E)RY, located near the cytoplasmic lipid/water interface in transmembrane helix 3 of G protein-coupled receptors (GPCRs). A large body of experimental evidence suggests that the protonation of E134 plays a role in the mechanism of activation of rhodopsin and other GPCRs as well. For E134 to change its protonation state, its pK(a) value must shift from values below physiological pH to higher values. Because of the proximity of the triad to the lipid/water interface, it was hypothesized that a change in solvent around E134 from water to lipid could induce such a shift in pK(a). To test this hypothesis, the pK(a) values of the titratable amino acid residues in rhodopsin have been calculated and the change in solvent around E134 was modeled by shifting the position of the lipid/water interface. The approach used to carry out the pK(a) calculations takes into account the partial immersion of transmembrane proteins in lipid. Qualitative experimental evidence is available for several residues regarding their likely protonation state in rhodopsin at or near physiological pH. Comparison of the calculated pK(a) values with these experimental findings shows good agreement between the two. Notably, glutamic acids E122 and E181 were found to be protonated. The pK(a) values were then calculated for a range of lipid/water interface positions. Although the surrounding solvent of several titratable residues changed from water to lipid in this range, leading to pK(a) shifts in most cases, only for E134 would the shift lead to a change in protonation state at physiological pH. Thus, our results show that the protonation state of E134 is particularly sensitive to its environment. This sensitivity together with the location of E134 near the actual position of the lipid/water interface could be a strategic element in the mechanism of activation of rhodopsin.
视紫红质中的谷氨酸E134是一个高度保守的三联体D(E)RY的一部分,该三联体位于G蛋白偶联受体(GPCRs)跨膜螺旋3靠近细胞质脂质/水界面的位置。大量实验证据表明,E134的质子化在视紫红质和其他GPCRs的激活机制中也发挥作用。为了使E134改变其质子化状态,其pK(a)值必须从低于生理pH的值转变为更高的值。由于三联体靠近脂质/水界面,因此有人推测E134周围的溶剂从水变为脂质可能会导致pK(a)发生这种转变。为了验证这一假设,已计算出视紫红质中可滴定氨基酸残基的pK(a)值,并通过改变脂质/水界面的位置来模拟E134周围溶剂的变化。用于进行pK(a)计算的方法考虑了跨膜蛋白在脂质中的部分浸没情况。关于视紫红质中几个残基在生理pH或接近生理pH时可能的质子化状态,已有定性实验证据。将计算出的pK(a)值与这些实验结果进行比较,发现两者之间具有良好的一致性。值得注意地是,发现谷氨酸E122和E181处于质子化状态。然后计算了一系列脂质/水界面位置的pK(a)值。尽管在此范围内几个可滴定残基周围的溶剂从水变为脂质,在大多数情况下导致了pK(a)的变化,但只有E134的这种变化会导致其在生理pH下质子化状态的改变。因此,我们的结果表明,E134的质子化状态对其环境特别敏感。这种敏感性以及E134在脂质/水界面实际位置附近的位置可能是视紫红质激活机制中的一个关键因素。