Pickholz Mónica, Saiz Leonor, Klein Michael L
Center for Molecular Modeling and Chemistry Department, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Biophys J. 2005 Mar;88(3):1524-34. doi: 10.1529/biophysj.104.044354. Epub 2004 Dec 21.
To gain insights into the molecular level mechanism of drug action at the membrane site, we have carried out extensive molecular dynamics simulations of a model membrane in the presence of a volatile anesthetic using a coarse-grain model. Six different anesthetic (halothane)/lipid (dimyristoylphosphatidylcholine) ratios have been investigated, going beyond the low doses typical of medical applications. The volatile anesthetics were introduced into a preassembled fully hydrated 512-molecule lipid bilayer and each of the molecular dynamics simulations were carried out at ambient conditions, using the NPT ensemble. The area per lipid increases monotonically with the halothane concentration and the lamellar spacing decreases, whereas the lipid bilayer thickness shows no appreciable differences and only a slight increase upon addition of halothane. The density profiles of the anesthetic molecules display a bimodal distribution along the membrane normal with maxima located close to the lipid-water interface region. We have studied how halothane molecules fluctuate between the two maxima of the bimodal distribution and we observed a different mechanism at low and high anesthetic concentrations. Through the investigation of the reorientational motions of the lipid tails, we found that the anesthetic molecules increase the segmental order of the lipids close to the membrane surface.
为深入了解药物在膜位点作用的分子水平机制,我们使用粗粒化模型对存在挥发性麻醉剂的模型膜进行了广泛的分子动力学模拟。研究了六种不同的麻醉剂(氟烷)/脂质(二肉豆蔻酰磷脂酰胆碱)比例,超出了医学应用中的低剂量范围。将挥发性麻醉剂引入预先组装好的完全水合的512分子脂质双层中,并且每个分子动力学模拟都在环境条件下使用NPT系综进行。每个脂质的面积随氟烷浓度单调增加,层间距减小,而脂质双层厚度没有明显差异,仅在添加氟烷后略有增加。麻醉剂分子的密度分布沿膜法线呈双峰分布,最大值位于靠近脂质 - 水界面区域。我们研究了氟烷分子在双峰分布的两个最大值之间如何波动,并且我们在低和高麻醉剂浓度下观察到了不同的机制。通过对脂质尾部重排运动的研究,我们发现麻醉剂分子增加了靠近膜表面脂质的链段有序性。