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本文引用的文献

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MULTISCALE TWO-DIMENSIONAL MODELING OF A MOTILE SIMPLE-SHAPED CELL.运动型简单形状细胞的多尺度二维建模
Multiscale Model Simul. 2005;3(2):413-439. doi: 10.1137/04060370X.
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Force generation by cytoskeletal filament end-tracking proteins.细胞骨架丝末端追踪蛋白产生的力。
Biophys J. 2004 Oct;87(4):2838-54. doi: 10.1529/biophysj.104.045211.
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Parallels between tissue repair and embryo morphogenesis.组织修复与胚胎形态发生之间的相似之处。
Development. 2004 Jul;131(13):3021-34. doi: 10.1242/dev.01253.
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Periodic lamellipodial contractions correlate with rearward actin waves.周期性片状伪足收缩与肌动蛋白向后波动相关。
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Intravital imaging of cell movement in tumours.肿瘤中细胞运动的活体成像
Nat Rev Cancer. 2003 Dec;3(12):921-30. doi: 10.1038/nrc1231.
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A continuum model of motility in ameboid cells.变形虫样细胞运动的连续体模型。
Bull Math Biol. 2004 Jan;66(1):167-93. doi: 10.1016/j.bulm.2003.08.007.
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Temporal variations in cell migration and traction during fibroblast-mediated gel compaction.成纤维细胞介导的凝胶压实过程中细胞迁移和牵引力的时间变化。
Biophys J. 2003 Jun;84(6):4102-14. doi: 10.1016/S0006-3495(03)75135-2.
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Synthetic matrix metalloproteinase-sensitive hydrogels for the conduction of tissue regeneration: engineering cell-invasion characteristics.用于组织再生传导的合成基质金属蛋白酶敏感水凝胶:工程化细胞侵袭特性
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Compensation mechanism in tumor cell migration: mesenchymal-amoeboid transition after blocking of pericellular proteolysis.肿瘤细胞迁移中的补偿机制:细胞周围蛋白水解受阻后的间充质-阿米巴样转变
J Cell Biol. 2003 Jan 20;160(2):267-77. doi: 10.1083/jcb.200209006. Epub 2003 Jan 13.
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The Ena/VASP enigma.埃娜/血管舒张刺激磷蛋白之谜。
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三维基质中细胞迁移的计算模型

Computational model for cell migration in three-dimensional matrices.

作者信息

Zaman Muhammad H, Kamm Roger D, Matsudaira Paul, Lauffenburger Douglas A

机构信息

Whitehead Institute for Biomedical Research, Biological Engineering Division, Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, 02142, USA.

出版信息

Biophys J. 2005 Aug;89(2):1389-97. doi: 10.1529/biophysj.105.060723. Epub 2005 May 20.

DOI:10.1529/biophysj.105.060723
PMID:15908579
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1366623/
Abstract

Although computational models for cell migration on two-dimensional (2D) substrata have described how various molecular and cellular properties and physiochemical processes are integrated to accomplish cell locomotion, the same issues, along with certain new ones, might contribute differently to a model for migration within three-dimensional (3D) matrices. To address this more complicated situation, we have developed a computational model for cell migration in 3D matrices using a force-based dynamics approach. This model determines an overall locomotion velocity vector, comprising speed and direction, for individual cells based on internally generated forces transmitted into external traction forces and considering a timescale during which multiple attachment and detachment events are integrated. Key parameters characterize cell and matrix properties, including cell/matrix adhesion and mechanical and steric properties of the matrix; critical underlying molecular properties are incorporated explicitly or implicitly. Model predictions agree well with experimental results for the limiting case of migration on 2D substrata as well as with recent experiments in 3D natural tissues and synthetic gels. Certain predicted features such as biphasic behavior of speed with density of matrix ligands for 3D migration are qualitatively similar to their 2D counterparts, but new effects generally absent in 2D systems, such as effects due to matrix sterics and mechanics, are now predicted to arise in many 3D situations. As one particular sample manifestation of these effects, the optimal levels of cell receptor expression and matrix ligand density yielding maximal migration are dependent on matrix mechanical compliance.

摘要

尽管二维(2D)基质上细胞迁移的计算模型已经描述了各种分子和细胞特性以及物理化学过程是如何整合以实现细胞运动的,但同样的问题,以及一些新问题,可能对三维(3D)基质内迁移模型的贡献有所不同。为了解决这种更复杂的情况,我们使用基于力的动力学方法开发了一种三维基质中细胞迁移的计算模型。该模型基于传递到外部牵引力的内部产生的力,并考虑多个附着和脱离事件整合的时间尺度,为单个细胞确定一个整体运动速度矢量,包括速度和方向。关键参数表征细胞和基质特性,包括细胞/基质粘附以及基质的机械和空间特性;关键的潜在分子特性被明确或隐含地纳入。模型预测与二维基质上迁移的极限情况的实验结果以及最近在三维天然组织和合成凝胶中的实验结果吻合良好。某些预测特征,如三维迁移中速度随基质配体密度的双相行为,在性质上与其二维对应物相似,但二维系统中通常不存在的新效应,如由于基质空间和力学引起的效应,现在预计会在许多三维情况下出现。作为这些效应的一个具体样本表现,产生最大迁移的细胞受体表达和基质配体密度的最佳水平取决于基质的机械顺应性。