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在微尺度上同时快速化学合成超过一百个寡核苷酸。

Simultaneous rapid chemical synthesis of over one hundred oligonucleotides on a microscale.

机构信息

Laboratoire de Génétique Moléculaire des Eucaryotes du CNRS, Unité 184 de Biologie Moléculaire et de Génie Génétique de 1'INSERM, Faculté de Médecine, 11 Rue Humann, 67085 Strasbourg Cedex, France.

出版信息

EMBO J. 1984 Apr;3(4):801-5. doi: 10.1002/j.1460-2075.1984.tb01888.x.

DOI:10.1002/j.1460-2075.1984.tb01888.x
PMID:16453516
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC557430/
Abstract

An inexpensive, extremely rapid manual method for simultaneous synthesis of large numbers of oligodeoxyribonucleotides on 50 or 150 nanomole scale is described. The oligonucleotides are assembled in parallel by the phosphotriester method on small cellulose paper disks in a simple gas pressure-controlled continuous-flow system. For each addition of a nucleotide the disks are sorted into four sets which are placed in four columns for addition of A, C, G and T, respectively. During one 2-week period, three rounds of synthesis by this method yielded 254 oligomers (8- to 22-mers), many of which were also purified during this time. Using 50 nanomole scale reactions the yields for 17-mers, for example, were in the range of 0.5 O.D.(260) units ( 5 nmol, i.e., 10% yield), an amount sufficient for most purposes. The equipment required is relatively inexpensive and for the most part usually already available in molecular biology laboratories. All chemicals are commercially available and the current reagent cost per oligonucleotide (25 mug, average length 17-mer) is 3 US dollars.

摘要

描述了一种在 50 或 150 毫摩尔规模下同时合成大量寡脱氧核苷酸的廉价、极快速的手动方法。寡核苷酸通过磷酸三酯法在小纤维素纸盘上平行组装,在简单的气压控制连续流动系统中进行。对于每个核苷酸的添加,将纸盘分成四组,分别放置在四个列中,用于添加 A、C、G 和 T。在两周的时间内,通过这种方法进行了三轮合成,得到了 254 个寡聚物(8 至 22 个核苷酸),其中许多在这段时间内也得到了纯化。例如,使用 50 毫摩尔规模的反应,17 个核苷酸的产率在 0.5 O.D.(260)单位(5 nmol,即 10%的产率)范围内,足以满足大多数目的。所需的设备相对便宜,而且在大多数情况下,分子生物学实验室通常已经具备了这些设备。所有化学物质均可商购,每个寡核苷酸的当前试剂成本(25 微克,平均长度为 17 个核苷酸)为 3 美元。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/79ee/557430/25368f7848ff/emboj00308-0112-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/79ee/557430/fabd91ad3ba0/emboj00308-0109-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/79ee/557430/e607cc69deb5/emboj00308-0111-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/79ee/557430/7603edfe2d4a/emboj00308-0111-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/79ee/557430/25368f7848ff/emboj00308-0112-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/79ee/557430/fabd91ad3ba0/emboj00308-0109-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/79ee/557430/e607cc69deb5/emboj00308-0111-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/79ee/557430/7603edfe2d4a/emboj00308-0111-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/79ee/557430/25368f7848ff/emboj00308-0112-a.jpg

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本文引用的文献

1
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2
Rapid synthesis of oligodeoxyribonucleotides VI. Efficient, mechanised synthesis of heptadecadeoxyribonucleotides by an improved solid phase phosphotriester route.寡脱氧核糖核苷酸的快速合成VI。通过改进的固相磷三酯路线高效、机械化合成十七聚脱氧核糖核苷酸。
Nucleic Acids Res. 1981 Apr 10;9(7):1691-706. doi: 10.1093/nar/9.7.1691.
3
New effective method for the synthesis of oligonucleotides via phosphotriester intermediates.
来源于构巢曲霉五功能AROM蛋白N端的单体单功能脱氢奎尼酸合酶的高效独立活性。
Biochem J. 1994 Jul 1;301 ( Pt 1)(Pt 1):297-304. doi: 10.1042/bj3010297.
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Filter disc supported oligonucleotide synthesis by the phosphite method.滤膜支持的亚磷酸酯法寡核苷酸合成。
Nucleic Acids Res. 1984 Dec 11;12(23):9137-42. doi: 10.1093/nar/12.23.9137.
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Improved rapid phosphotriester synthesis of oligodeoxyribonucleotides using oxygen-nucleophilic catalysts.使用氧亲核催化剂改进寡脱氧核糖核苷酸的快速磷酸三酯合成法。
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Solid-phase methods for sequencing of nucleic acids I. Simultaneous sequencing of different oligodeoxyribonucleotides using a new, mechanically stable anion-exchange paper.核酸测序的固相方法I. 使用一种新型机械稳定阴离子交换纸同时对不同寡脱氧核糖核苷酸进行测序
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A mouse gene family associated with a major submaxillary-gland glycoprotein.一个与主要颌下腺糖蛋白相关的小鼠基因家族。
Biochem J. 1985 Feb 1;225(3):657-63. doi: 10.1042/bj2250657.
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Nucleotide sequence encoding the biosynthetic dehydroquinase function of the penta-functional arom locus of Aspergillus nidulans.编码构巢曲霉五功能芳香族基因座生物合成脱氢奎尼酸酶功能的核苷酸序列。
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Nucleotide sequence analysis of the cat gene of Proteus mirabilis: comparison with the type I (Tn9) cat gene.奇异变形杆菌cat基因的核苷酸序列分析:与I型(Tn9)cat基因的比较。
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Nucleic Acids Res. 1985 May 10;13(9):3305-16. doi: 10.1093/nar/13.9.3305.
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Isolation of a genomic clone for bovine pancreatic trypsin inhibitor by using a unique-sequence synthetic DNA probe.利用独特序列合成DNA探针分离牛胰蛋白酶抑制剂的基因组克隆。
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Silica gel: an improved support for the solid-phase phosphotriester synthesis of oligonucleotides.硅胶:用于寡核苷酸固相磷酸三酯合成的一种改进载体。
Nucleic Acids Res. 1982 Nov 25;10(22):7439-48. doi: 10.1093/nar/10.22.7439.
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Gene expression: chemical synthesis of E. coli ribosome binding sites and their use in directing the expression of mammalian proteins in bacteria.基因表达:大肠杆菌核糖体结合位点的化学合成及其在指导细菌中哺乳动物蛋白表达中的应用。
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Structural homology of Torpedo californica acetylcholine receptor subunits.加州电鳐乙酰胆碱受体亚基的结构同源性。
Nature. 1983 Apr 7;302(5908):528-32. doi: 10.1038/302528a0.