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在连续介质溶剂计算中添加明确的溶剂分子以计算水相酸解离常数。

Adding explicit solvent molecules to continuum solvent calculations for the calculation of aqueous acid dissociation constants.

作者信息

Kelly Casey P, Cramer Christopher J, Truhlar Donald G

机构信息

Department of Chemistry and Supercomputing Institute, 207 Pleasant Street SE, University of Minnesota, Minneapolis, Minnesota 55455-0431, USA.

出版信息

J Phys Chem A. 2006 Feb 23;110(7):2493-9. doi: 10.1021/jp055336f.

Abstract

Aqueous acid dissociation free energies for a diverse set of 57 monoprotic acids have been calculated using a combination of experimental and calculated gas and liquid-phase free energies. For ionic species, aqueous solvation free energies were calculated using the recently developed SM6 continuum solvation model. This model combines a dielectric continuum with atomic surface tensions to account for bulk solvent effects. For some of the acids studied, a combined approach that involves attaching a single explicit water molecule to the conjugate base (anion), and then surrounding the resulting anion-water cluster by a dielectric continuum, significantly improves the agreement between the calculated pK(a) value and experiment. This suggests that for some anions, particularly those concentrating charge on a single exposed heteroatom, augmenting implicit solvent calculations with a single explicit water molecule is required, and adequate, to account for strong short-range hydrogen bonding interactions between the anion and the solvent. We also demonstrate the effect of adding several explicit waters by calculating the pK(a) of bicarbonate (HCO(3)(-)) using as the conjugate base carbonate (CO(3)(2-)) bound by up to three explicit water molecules.

摘要

利用实验和计算得到的气相和液相自由能,计算了57种不同的一元酸的水相酸解离自由能。对于离子物种,使用最近开发的SM6连续介质溶剂化模型计算水相溶剂化自由能。该模型将介电连续介质与原子表面张力相结合,以考虑本体溶剂效应。对于一些所研究的酸,一种联合方法显著提高了计算的pK(a)值与实验值之间的一致性,该方法包括将单个显式水分子连接到共轭碱(阴离子)上,然后用介电连续介质包围所得的阴离子-水簇。这表明,对于一些阴离子,特别是那些将电荷集中在单个暴露杂原子上的阴离子,用单个显式水分子增强隐式溶剂计算是必要的且足够的,以考虑阴离子与溶剂之间强烈的短程氢键相互作用。我们还通过计算碳酸氢根(HCO(3)(-))的pK(a)来证明添加几个显式水分子的效果,其中共轭碱碳酸根(CO(3)(2-))与多达三个显式水分子结合。

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