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将铁锈色[黄杆菌属]重新分类为铁锈色土栖菌新属、新组合,并描述从土壤中分离出的新种黄体土栖菌。

Reclassification of [Flavobacterium] ferrugineum as Terrimonas ferruginea gen. nov., comb. nov., and description of Terrimonas lutea sp. nov., isolated from soil.

作者信息

Xie Cheng-Hui, Yokota Akira

机构信息

Institute of Molecular and Cellular Biosciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-Ku, Tokyo 113-0032, Japan.

出版信息

Int J Syst Evol Microbiol. 2006 May;56(Pt 5):1117-1121. doi: 10.1099/ijs.0.64115-0.

Abstract

Strain DY(T), which was isolated from garden soil in Japan, was subjected to a polyphasic taxonomic study. Sequence analysis of the 16S rRNA gene and the GyrB protein revealed that the closest relative of strain DYT was [Flavobacterium] ferrugineum Sickles and Shaw 1934, with 94.8 and 90.1 % similarity, respectively. The two strains had similar chemotaxonomic characteristics, with menaquinone 7 as the major quinone system, 47.2-48.9 mol% DNA G+C content and 15 : 0 iso, 15 : 1 iso, 17 : 0 iso 3-OH and summed feature 3 as the major fatty acids. Based on genotypic and phenotypic characteristics, [Flavobacterium] ferrugineum IAM 15098T could be clearly differentiated from other members of the genus Flavobacterium. Strain DYT and [Flavobacterium] ferrugineum IAM 15098T could be easily distinguished from neighbouring taxa by morphological features (non-motile, non-gliding and non-filamentous single cells). Therefore, it is proposed that [Flavobacterium] ferrugineum IAM 15098T and strain DYT represent two separate species of a new genus, Terrimonas gen. nov., with the names Terrimonas ferruginea comb. nov. (type species; type strain IAM 15098T=ATCC 13524T) and Terrimonas lutea sp. nov. (type strain DYT=IAM 15284T=CCTCC AB205006T), respectively.

摘要

从日本花园土壤中分离出的菌株DY(T),进行了多相分类学研究。16S rRNA基因和GyrB蛋白的序列分析表明,菌株DYT的最接近亲缘种是1934年的铁锈色黄杆菌([Flavobacterium] ferrugineum)Sickles和Shaw,相似性分别为94.8%和90.1%。这两个菌株具有相似的化学分类特征,以甲基萘醌7作为主要醌系统,DNA G+C含量为47.2 - 48.9 mol%,以iso-15 : 0、iso-15 : 1、iso-17 : 0 3-OH和特征性脂肪酸总和3作为主要脂肪酸。基于基因型和表型特征,铁锈色黄杆菌([Flavobacterium] ferrugineum)IAM 15098T可以与黄杆菌属的其他成员明显区分开来。菌株DYT和铁锈色黄杆菌([Flavobacterium] ferrugineum)IAM 15098T可以通过形态特征(不运动、不滑动且不成丝状的单细胞)很容易地与邻近分类单元区分开来。因此,建议将铁锈色黄杆菌([Flavobacterium] ferrugineum)IAM 15098T和菌株DYT分别代表一个新属——土栖菌属(Terrimonas gen. nov.)的两个独立物种,分别命名为铁锈色土栖菌(Terrimonas ferruginea comb. nov.)(模式种;模式菌株IAM 15098T = ATCC 13524T)和黄色土栖菌(Terrimonas lutea sp. nov.)(模式菌株DYT = IAM 15284T = CCTCC AB205006T)。

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