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新属,新种,从蘑菇堆肥中分离出的一个家族成员。

gen. nov., sp. nov., a member of the family isolated from button mushroom compost.

机构信息

School of Life and Environmental Sciences, The University of Sydney, Sydney, NSW, 2006, Australia.

出版信息

Int J Syst Evol Microbiol. 2024 Aug;74(8). doi: 10.1099/ijsem.0.006496.

Abstract

Two Gram-stain-negative, aerobic, rod-shaped, orange-coloured bacterial strains, designated strain C216 and strain M2295, were isolated from mature mushroom compost from composting facilities in Victoria and South Australia, Australia, respectively. External structures such as flagella or pili were not observed on the cells under scanning electron microscopy. Optimal growth was found to occur at 45 °C, at pH 7.25 and in the absence of NaCl on Emerson's 350 YpSs medium. The genome sequence of strain C216 was 3 342 126 bp long with a G+C content of 40.5 mol%. Functional analysis of the genome of strain C216 revealed genes encoding chitinolytic and hemi-cellulolytic functions, with 166 predicted genes associated with carbohydrate metabolism (8.9% of the predicted genes). These functions are important for survival in the mushroom compost environment, which is rich in hemicelluloses. No antibiotic resistance genes were found in the genome sequence. The major fatty acids of strain C216 were iso-C (56.7%), iso-C 3-OH (15.6%), C 7/iso-C 2-OH (7.3%) and iso-C G (6.1%). The only respiratory quinone was MK-7. The major polar lipid of strain C216 was phosphatidylethanolamine, but three unidentified phospholipids, four unidentified aminophospholipids/aminolipids and one unidentified glycolipid were also detected. Phylogenetic analysis based on proteins encoded by the core genome (bac120, 120 conserved bacterial genes) showed that strain C216 forms a distinct lineage in the family and that the closest identified relative is (69.69% ANI). These data demonstrate that strain C216 represents a novel genus and novel species within the family , for which we propose the name . The type strain is C216 (=DSM 114558=LMG 32998).

摘要

两株革兰氏阴性、需氧、杆状、橙色细菌菌株,分别命名为 C216 菌株和 M2295 菌株,分别从澳大利亚维多利亚州和南澳大利亚州堆肥设施中的成熟蘑菇堆肥中分离得到。在扫描电子显微镜下观察,细胞没有观察到鞭毛或菌毛等外部结构。在 Emerson 的 350 YpSs 培养基中,最佳生长条件为 45°C、pH 值 7.25 和无 NaCl。C216 菌株的基因组序列长 3 342 126bp,G+C 含量为 40.5mol%。C216 菌株基因组的功能分析显示,编码几丁质酶和半纤维素酶功能的基因,与碳水化合物代谢相关的 166 个预测基因(预测基因的 8.9%)。这些功能对于在富含半纤维素的蘑菇堆肥环境中生存非常重要。在基因组序列中未发现抗生素抗性基因。C216 菌株的主要脂肪酸为 iso-C(56.7%)、iso-C 3-OH(15.6%)、C 7/iso-C 2-OH(7.3%)和 iso-C G(6.1%)。唯一的呼吸醌是 MK-7。C216 菌株的主要极性脂是磷脂酰乙醇胺,但还检测到三种未鉴定的磷脂、四种未鉴定的氨基磷脂/氨基脂和一种未鉴定的糖脂。基于核心基因组(bac120,120 个保守细菌基因)编码的蛋白质进行的系统发育分析表明,C216 菌株在家族中形成一个独特的谱系,最接近的鉴定相关菌株是 (69.69%ANI)。这些数据表明,C216 菌株代表了家族中的一个新属和新种,我们建议将其命名为 。模式菌株为 C216(=DSM 114558=LMG 32998)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4c81/11349053/6b2179625c5b/ijsem-74-06496-g001.jpg

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