Marintcheva Boriana, Hamdan Samir M, Lee Seung-Joo, Richardson Charles C
Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts 02115, USA.
J Biol Chem. 2006 Sep 1;281(35):25831-40. doi: 10.1074/jbc.M604601200. Epub 2006 Jun 28.
Gene 2.5 of bacteriophage T7 encodes a single-stranded DNA (ssDNA)-binding protein (gp2.5) that is an essential component of the phage replisome. Similar to other prokaryotic ssDNA-binding proteins, gp2.5 has an acidic C terminus that is involved in protein-protein interactions at the replication fork and in modulation of the ssDNA binding properties of the molecule. We have used genetic and biochemical approaches to identify residues critical for the function of the C terminus of gp2.5. The presence of an aromatic residue in the C-terminal position is essential for gp2.5 function. Deletion of the C-terminal residue, phenylalanine, is detrimental to its function, as is the substitution of this residue with non-aromatic amino acids. Placing the C-terminal phenylalanine in the penultimate position also results in loss of function. Moderate shortening of the length of the acidic portion of the C terminus is tolerated when the aromatic nature of the C-terminal residue is preserved. Gradual removal of the acidic C terminus of gp2.5 results in a higher affinity for ssDNA and a decreased ability to interact with T7 DNA polymerase/thioredoxin. The replacement of the charged residues in the C terminus with neutral amino acids abolishes gp2.5 function. Our data show that both the C-terminal aromatic residue and the overall acidic charge of the C terminus of gp2.5 are critical for its function.
噬菌体T7的基因2.5编码一种单链DNA(ssDNA)结合蛋白(gp2.5),它是噬菌体复制体的一个重要组成部分。与其他原核生物的ssDNA结合蛋白类似,gp2.5有一个酸性的C末端,该末端参与复制叉处的蛋白质-蛋白质相互作用以及分子ssDNA结合特性的调节。我们利用遗传学和生物化学方法来确定对gp2.5 C末端功能至关重要的残基。C末端位置存在一个芳香族残基对gp2.5的功能至关重要。删除C末端残基苯丙氨酸对其功能有害,用非芳香族氨基酸取代该残基也如此。将C末端苯丙氨酸置于倒数第二个位置也会导致功能丧失。当C末端残基的芳香族性质得以保留时,C末端酸性部分长度的适度缩短是可以耐受的。逐渐去除gp2.5的酸性C末端会导致对ssDNA的亲和力增加以及与T7 DNA聚合酶/硫氧还蛋白相互作用的能力下降。用中性氨基酸取代C末端的带电荷残基会使gp2.5功能丧失。我们的数据表明,gp2.5的C末端芳香族残基和C末端的整体酸性电荷对其功能都至关重要。