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水生食杆菌新种,从饮用水中分离得到,以及食杆菌属的修订描述。

Pedobacter aquatilis sp. nov., isolated from drinking water, and emended description of the genus Pedobacter.

作者信息

Gallego Virginia, García Maria Teresa, Ventosa Antonio

机构信息

Department of Microbiology and Parasitology, Faculty of Pharmacy, University of Sevilla, 41012 Sevilla, Spain.

出版信息

Int J Syst Evol Microbiol. 2006 Aug;56(Pt 8):1853-1858. doi: 10.1099/ijs.0.64176-0.

Abstract

A Gram-negative, rod-shaped, non-spore-forming bacterium (strain AR107(T)) was isolated from the drinking water distribution system of Seville (Spain). A polyphasic taxonomic study of the isolate resulted in its identification as a member of the genus Pedobacter. On the basis of 16S rRNA gene sequence comparisons, strain AR107(T) was shown to belong to the phylum Bacteroidetes, being related to members of the genus Pedobacter. It showed 95.2 % sequence similarity with respect to the type strains of Pedobacter heparinus and Pedobacter piscium, and 94.1 % similarity with respect to the type strain of Pedobacter himalayensis. The predominant fatty acids were iso-C(15 : 0), iso-C(17 : 0) 3-OH and summed feature 3 (iso-C(15 : 0) 2-OH and/or C(16 : 1)omega7c), which supports the affiliation of strain AR107(T) to the genus Pedobacter. The DNA G+C content of this strain was 38 mol%. On the basis of the phenotypic, phylogenetic and genotypic results, strain AR107(T) represents a novel species, for which the name Pedobacter aquatilis sp. nov. is proposed. The type strain is AR107(T) (=CCM 7347(T)=CECT 7114(T)=JCM 13454(T)).

摘要

从西班牙塞维利亚的饮用水分配系统中分离出一株革兰氏阴性、杆状、无芽孢形成的细菌(菌株AR107(T))。对该分离株进行的多相分类研究结果表明,它被鉴定为Pedobacter属的一个成员。基于16S rRNA基因序列比较,菌株AR107(T)被证明属于拟杆菌门,与Pedobacter属的成员相关。它与Pedobacter heparinus和Pedobacter piscium的模式菌株的序列相似性为95.2%,与Pedobacter himalayensis的模式菌株的相似性为94.1%。主要脂肪酸为异-C(15 : 0)、异-C(17 : 0) 3-OH和总和特征3(异-C(15 : 0) 2-OH和/或C(16 : 1)ω7c),这支持菌株AR107(T)属于Pedobacter属。该菌株的DNA G+C含量为38 mol%。基于表型、系统发育和基因型结果,菌株AR107(T)代表一个新物种,为此提出名称Pedobacter aquatilis sp. nov.。模式菌株为AR107(T)(=CCM 7347(T)=CECT 7114(T)=JCM 13454(T))。

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