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感染小球藻Pbi的314kb MT325病毒和321kb FR483病毒的序列及注释。

Sequence and annotation of the 314-kb MT325 and the 321-kb FR483 viruses that infect Chlorella Pbi.

作者信息

Fitzgerald Lisa A, Graves Michael V, Li Xiao, Feldblyum Tamara, Hartigan James, Van Etten James L

机构信息

Deparment of Chemistry, University of Nebraska-Lincoln, Lincoln, NE 68588-0304, USA.

出版信息

Virology. 2007 Feb 20;358(2):459-71. doi: 10.1016/j.virol.2006.08.034. Epub 2006 Oct 4.

Abstract

Viruses MT325 and FR483, members of the family Phycodnaviridae, genus Chlorovirus, infect the fresh water, unicellular, eukaryotic, chlorella-like green alga, Chlorella Pbi. The 314,335-bp genome of MT325 and the 321,240-bp genome of FR483 are the first viruses that infect Chlorella Pbi to have their genomes sequenced and annotated. Furthermore, these genomes are the two smallest chlorella virus genomes sequenced to date, MT325 has 331 putative protein-encoding and 10 tRNA-encoding genes and FR483 has 335 putative protein-encoding and 9 tRNA-encoding genes. The protein-encoding genes are almost evenly distributed on both strands, and intergenic space is minimal. Approximately 40% of the viral gene products resemble entries in public databases, including some that are the first of their kind to be detected in a virus. For example, these unique gene products include an aquaglyceroporin in MT325, a potassium ion transporter protein and an alkyl sulfatase in FR483, and a dTDP-glucose pyrophosphorylase in both viruses. Comparison of MT325 and FR483 protein-encoding genes with the prototype chlorella virus PBCV-1 indicates that approximately 82% of the genes are present in all three viruses.

摘要

MT325病毒和FR483病毒属于绿藻病毒科绿藻病毒属,可感染淡水单细胞真核小球藻样绿藻——小球藻Pbi。MT325病毒314,335碱基对的基因组和FR483病毒321,240碱基对的基因组是首批对感染小球藻Pbi的病毒进行基因组测序和注释的病毒。此外,这些基因组是迄今为止测序的两个最小的小球藻病毒基因组,MT325有331个推定的蛋白质编码基因和10个tRNA编码基因,FR483有335个推定的蛋白质编码基因和9个tRNA编码基因。蛋白质编码基因几乎均匀地分布在两条链上,基因间间隔最小。约40%的病毒基因产物与公共数据库中的条目相似,包括一些在病毒中首次检测到的基因产物。例如,这些独特的基因产物包括MT325中的水甘油通道蛋白、FR483中的钾离子转运蛋白和烷基硫酸酯酶,以及两种病毒中的dTDP-葡萄糖焦磷酸化酶。将MT325和FR483的蛋白质编码基因与原型小球藻病毒PBCV-1进行比较表明,约82%的基因存在于所有三种病毒中。

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