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用于综合相关实验中差异表达特征列表的统计工具。

Statistical tools for synthesizing lists of differentially expressed features in related experiments.

作者信息

Blangiardo Marta, Richardson Sylvia

机构信息

Centre for Biostatistics, Imperial College, St Mary's Campus, Norfolk Place, London, UK.

出版信息

Genome Biol. 2007;8(4):R54. doi: 10.1186/gb-2007-8-4-r54.

DOI:10.1186/gb-2007-8-4-r54
PMID:17428330
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1896017/
Abstract

We propose a novel approach for finding a list of features that are commonly perturbed in two or more experiments, quantifying the evidence of dependence between the experiments by a ratio. We present a Bayesian analysis of this ratio, which leads us to suggest two rules for choosing a cut-off on the ranked list of p values. We evaluate and compare the performance of these statistical tools in a simulation study, and show their usefulness on two real datasets.

摘要

我们提出了一种新颖的方法,用于找出在两个或更多实验中普遍受到干扰的一系列特征,并通过一个比率来量化实验之间的相关性证据。我们对这个比率进行了贝叶斯分析,这使我们提出了两条规则,用于在p值排名列表上选择一个截止值。我们在模拟研究中评估并比较了这些统计工具的性能,并在两个真实数据集上展示了它们的实用性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e3aa/1896017/58507acbbebf/gb-2007-8-4-r54-5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e3aa/1896017/06d463a28f1d/gb-2007-8-4-r54-1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e3aa/1896017/8683929c2de9/gb-2007-8-4-r54-2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e3aa/1896017/0e804fc13490/gb-2007-8-4-r54-3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e3aa/1896017/1e9db67574eb/gb-2007-8-4-r54-4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e3aa/1896017/58507acbbebf/gb-2007-8-4-r54-5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e3aa/1896017/06d463a28f1d/gb-2007-8-4-r54-1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e3aa/1896017/8683929c2de9/gb-2007-8-4-r54-2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e3aa/1896017/0e804fc13490/gb-2007-8-4-r54-3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e3aa/1896017/1e9db67574eb/gb-2007-8-4-r54-4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e3aa/1896017/58507acbbebf/gb-2007-8-4-r54-5.jpg

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