Graham Laurie A, Qin Wensheng, Lougheed Stephen C, Davies Peter L, Walker Virginia K
Department of Biochemistry, Queen's University, Kingston, Ontario, Canada.
J Mol Evol. 2007 Apr;64(4):387-98. doi: 10.1007/s00239-005-0256-3. Epub 2007 Apr 18.
Some organisms that experience subzero temperatures, such as insects, fish, bacteria, and plants, synthesize antifreeze proteins (AFPs) that adsorb to surfaces of nascent ice crystals and inhibit their growth. Although some AFPs are globular and nonrepetitive, the majority are repetitive in both sequence and structure. In addition, they are frequently encoded by tandemly arrayed, multigene families. AFP isoforms from the mealworm beetle, Tenebrio molitor, are extremely potent and inhibit ice growth at temperatures below -5 degrees C. They contain a 12-amino acid repeat with the sequence TCTxSxxCxxAx, each of which makes up one coil of the beta-helix structure. TxT motifs are arrayed to form the ice-binding surface in all three known insect AFPs: the homologous AFPs from the two beetles, T. molitor and Dendroides canadensis, and the nonhomologous AFP from the spruce budworm, Choristoneura fumiferana. In this study, we have obtained the cDNA and genomic sequences of additional T. molitor isoforms. They show variation in the number of repeats (from 6 to 10) which can largely be explained by recombination at various TCT motifs. In addition, phylogenetic comparison of the AFPs from the two beetles suggests that gene loss and amplification may have occurred after the divergence of these species. In contrast to a previous study suggesting that T. molitor genes have undergone positive Darwinian selection (selection for heterogeneity), we propose that the higher than expected ratio of nonsynonymous-to-synonymous substitutions might result from selection for higher AT content in the third codon position.
一些经历零下温度的生物体,如昆虫、鱼类、细菌和植物,会合成抗冻蛋白(AFP),这些抗冻蛋白吸附在新生冰晶的表面并抑制其生长。虽然一些抗冻蛋白是球状且非重复的,但大多数在序列和结构上都是重复的。此外,它们通常由串联排列的多基因家族编码。黄粉虫(Tenebrio molitor)的抗冻蛋白亚型具有极强的活性,能在低于 -5摄氏度的温度下抑制冰的生长。它们包含一个由12个氨基酸组成的重复序列TCTxSxxCxxAx,每个重复序列构成β - 螺旋结构的一圈。TxT基序排列形成了所有三种已知昆虫抗冻蛋白的冰结合表面:两种甲虫(黄粉虫和加拿大云杉甲虫Dendroides canadensis)的同源抗冻蛋白,以及云杉芽虫(Choristoneura fumiferana)的非同源抗冻蛋白。在本研究中,我们获得了额外的黄粉虫亚型的cDNA和基因组序列。它们在重复序列的数量上存在差异(从6到10个),这在很大程度上可以通过不同TCT基序处的重组来解释。此外,对这两种甲虫的抗冻蛋白进行系统发育比较表明,在这些物种分化后可能发生了基因丢失和扩增。与之前一项表明黄粉虫基因经历了正向达尔文选择(对异质性的选择)的研究相反,我们认为非同义替换与同义替换的比率高于预期可能是由于对第三个密码子位置更高的AT含量的选择所致。