• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

二醇脱水酶:钾离子在腺苷钴胺素钴-碳键均裂中的重要作用。

Dioldehydrase: an essential role for potassium ion in the homolytic cleavage of the cobalt-carbon bond in adenosylcobalamin.

作者信息

Schwartz Phillip A, Frey Perry A

机构信息

Department of Biochemistry, University of Wisconsin-Madison, 1710 University Avenue, Madison, Wisconsin 53726, USA.

出版信息

Biochemistry. 2007 Jun 19;46(24):7293-301. doi: 10.1021/bi700078z. Epub 2007 May 22.

DOI:10.1021/bi700078z
PMID:17516630
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2516201/
Abstract

The complex of dioldehydrase with adenosylcobalamin (coenzyme B12) and potassium ion reacts with molecular oxygen in the absence of a substrate to oxidize coenzyme and inactivate the complex. In this article, high performance liquid chromatography and mass spectral analysis are used to identify the nucleoside products resulting from oxygen inactivation. The product profile indicates that oxygen inactivation proceeds by direct reaction of molecular oxygen with the 5'-deoxyadenosyl radical and cob(II)alamin. Formation of 5'-peroxyadenosine as the initial nucleoside product chemically correlates this reaction with aerobic, aqueous photoinduced homolytic cleavage of adenosylcobalamin (Schwartz, P. A., and Frey, P. A., (2007) Biochemistry, in press), indicating that both reactions proceed through similar chemical intermediates. The oxygen inactivation of the enzyme-coenzyme complex shows an absolute requirement for the same monocations required in catalysis by dioldehydrase. Measurements of the dissociation constants for adenosylcobalamin from potassium-free (Kd = 16 +/- 2 microM) or potassium-bound dioldehydrase (Kd = 0.8 +/- 0.2 microM) reveal that the effect of the monocation in stimulating oxygen sensitivity cannot be explained by an effect on the binding of coenzyme to the enzyme. Cross-linking experiments suggest that the full quaternary structure is assembled in the absence of potassium ion under the experimental conditions. The results indicate that dioldehydrase likely harvests the binding energy of the activating monocation to stimulate the homolytic cleavage of the Co-C5' bond in adenosylcobalamin.

摘要

二醇脱水酶与腺苷钴胺素(辅酶B12)和钾离子的复合物在没有底物的情况下与分子氧反应,氧化辅酶并使复合物失活。在本文中,采用高效液相色谱和质谱分析来鉴定氧失活产生的核苷产物。产物谱表明,氧失活是通过分子氧与5'-脱氧腺苷自由基和钴胺素(II)直接反应进行的。作为初始核苷产物的5'-过氧腺苷的形成在化学上将该反应与腺苷钴胺素的需氧水相光诱导均裂(施瓦茨,P.A.,和弗雷,P.A.,(2007年)《生物化学》,即将出版)相关联,表明这两个反应都通过相似的化学中间体进行。酶 - 辅酶复合物的氧失活显示出对二醇脱水酶催化所需的相同单价阳离子的绝对需求。对无钾(Kd = 16 +/- 2 microM)或结合钾的二醇脱水酶(Kd = 0.8 +/- 0.2 microM)中腺苷钴胺素解离常数的测量表明,单价阳离子在刺激氧敏感性方面的作用不能通过对辅酶与酶结合的影响来解释。交联实验表明,在实验条件下,完整的四级结构在没有钾离子的情况下组装。结果表明,二醇脱水酶可能利用活化单价阳离子的结合能来刺激腺苷钴胺素中Co - C5'键的均裂。

相似文献

1
Dioldehydrase: an essential role for potassium ion in the homolytic cleavage of the cobalt-carbon bond in adenosylcobalamin.二醇脱水酶:钾离子在腺苷钴胺素钴-碳键均裂中的重要作用。
Biochemistry. 2007 Jun 19;46(24):7293-301. doi: 10.1021/bi700078z. Epub 2007 May 22.
2
Interactions of diol dehydrase and 3',4'-anhydroadenosylcobalamin: suicide inactivation by electron transfer.二醇脱水酶与3',4'-脱水腺苷钴胺素的相互作用:通过电子转移实现自杀失活
Biochemistry. 2002 Feb 5;41(5):1695-702. doi: 10.1021/bi011947w.
3
A new mode of B12 binding and the direct participation of a potassium ion in enzyme catalysis: X-ray structure of diol dehydratase.维生素B12结合的新模式以及钾离子在酶催化中的直接参与:二醇脱水酶的X射线结构
Structure. 1999 Aug 15;7(8):997-1008. doi: 10.1016/s0969-2126(99)80126-9.
4
5'-Peroxyadenosine and 5'-peroxyadenosylcobalamin as intermediates in the aerobic photolysis of adenosylcobalamin.5'-过氧腺苷和5'-过氧腺苷钴胺素作为腺苷钴胺素需氧光解的中间体。
Biochemistry. 2007 Jun 19;46(24):7284-92. doi: 10.1021/bi700077v. Epub 2007 May 16.
5
Probing interactions from solvent-exchangeable protons and monovalent cations with the 1,2-propanediol-1-yl radical intermediate in the reaction of dioldehydrase.在二醇脱水酶反应中,通过可与溶剂交换的质子和单价阳离子探测与1,2-丙二醇-1-基自由基中间体的相互作用。
Protein Sci. 2007 Jun;16(6):1157-64. doi: 10.1110/ps.072768007.
6
Mechanism-based inactivation of coenzyme B12-dependent diol dehydratase by 3-unsaturated 1,2-diols and thioglycerol.基于机制的3-不饱和1,2-二醇和硫代甘油对依赖辅酶B12的二醇脱水酶的失活作用
J Biochem. 2008 Oct;144(4):437-46. doi: 10.1093/jb/mvn086. Epub 2008 Jun 27.
7
Radical catalysis of B12 enzymes: structure, mechanism, inactivation, and reactivation of diol and glycerol dehydratases.钴胺素(B12)酶的自由基催化作用:二醇脱水酶和甘油脱水酶的结构、机制、失活及再激活
Cell Mol Life Sci. 2000 Jan 20;57(1):106-27. doi: 10.1007/s000180050502.
8
Characterization of protein contributions to cobalt-carbon bond cleavage catalysis in adenosylcobalamin-dependent ethanolamine ammonia-lyase by using photolysis in the ternary complex.利用三元复合物中的光解作用对依赖于腺苷钴胺素的乙醇胺氨裂解酶中钴-碳键断裂催化的蛋白质贡献进行表征。
J Am Chem Soc. 2011 May 11;133(18):6968-77. doi: 10.1021/ja107052p. Epub 2011 Apr 14.
9
Evidence for axial coordination of 5,6-dimethylbenzimidazole to the cobalt atom of adenosylcobalamin bound to diol dehydratase.5,6-二甲基苯并咪唑与结合在二醇脱水酶上的腺苷钴胺素钴原子轴向配位的证据。
Biochemistry. 1998 Apr 7;37(14):4799-803. doi: 10.1021/bi972572a.
10
Identification of cis-ethanesemidione as the organic radical derived from glycolaldehyde in the suicide inactivation of dioldehydrase and of ethanolamine ammonia-lyase.鉴定顺式乙烷半二酮为二醇脱水酶和乙醇胺氨裂解酶自杀失活过程中源自乙醇醛的有机自由基。
Biochemistry. 2000 May 23;39(20):6250-7. doi: 10.1021/bi992963k.

引用本文的文献

1
Evolutionary adaptations that enable enzymes to tolerate oxidative stress.使酶能够耐受氧化应激的进化适应。
Free Radic Biol Med. 2019 Aug 20;140:4-13. doi: 10.1016/j.freeradbiomed.2019.01.048. Epub 2019 Feb 6.
2
Metabolic functions of the human gut microbiota: the role of metalloenzymes.人体肠道微生物群的代谢功能:金属酶的作用。
Nat Prod Rep. 2019 Apr 17;36(4):593-625. doi: 10.1039/c8np00074c.
3
Monovalent Cation Activation of the Radical SAM Enzyme Pyruvate Formate-Lyase Activating Enzyme.单价阳离子激活自由基 S-腺苷甲硫氨酸酶丙酮酸甲酸裂解酶激活酶。
J Am Chem Soc. 2017 Aug 30;139(34):11803-11813. doi: 10.1021/jacs.7b04883. Epub 2017 Aug 22.
4
Measurement of crude-cell-extract glycerol dehydratase activity in recombinant Escherichia coli using coupled-enzyme reactions.利用偶联酶反应测定重组大肠杆菌中粗细胞提取物甘油脱水酶的活性。
J Ind Microbiol Biotechnol. 2017 Mar;44(3):477-488. doi: 10.1007/s10295-017-1902-7. Epub 2017 Jan 16.
5
Transient intermediates in enzymology, 1964-2008.酶学中的瞬态中间体,1964 - 2008年
J Biol Chem. 2015 Apr 24;290(17):10610-26. doi: 10.1074/jbc.X115.650879. Epub 2015 Mar 9.
6
Cobalamin- and corrinoid-dependent enzymes.钴胺素和类咕啉依赖性酶。
Met Ions Life Sci. 2009;6:53-114. doi: 10.1039/BK9781847559159-00053. Epub 2009 Jan 30.
7
Crystal structures of ethanolamine ammonia-lyase complexed with coenzyme B12 analogs and substrates.乙醇胺氨裂解酶与辅酶 B12 类似物和底物复合物的晶体结构。
J Biol Chem. 2010 Aug 20;285(34):26484-93. doi: 10.1074/jbc.M110.125112. Epub 2010 Jun 1.
8
Determination of alkali and halide monovalent ion parameters for use in explicitly solvated biomolecular simulations.用于显式溶剂化生物分子模拟的碱金属和卤化物单价离子参数的测定。
J Phys Chem B. 2008 Jul 31;112(30):9020-41. doi: 10.1021/jp8001614. Epub 2008 Jul 2.

本文引用的文献

1
Probing interactions from solvent-exchangeable protons and monovalent cations with the 1,2-propanediol-1-yl radical intermediate in the reaction of dioldehydrase.在二醇脱水酶反应中,通过可与溶剂交换的质子和单价阳离子探测与1,2-丙二醇-1-基自由基中间体的相互作用。
Protein Sci. 2007 Jun;16(6):1157-64. doi: 10.1110/ps.072768007.
2
5'-Peroxyadenosine and 5'-peroxyadenosylcobalamin as intermediates in the aerobic photolysis of adenosylcobalamin.5'-过氧腺苷和5'-过氧腺苷钴胺素作为腺苷钴胺素需氧光解的中间体。
Biochemistry. 2007 Jun 19;46(24):7284-92. doi: 10.1021/bi700077v. Epub 2007 May 16.
3
When a spectator turns killer: suicidal electron transfer from cobalamin in methylmalonyl-CoA mutase.当旁观者变成杀手:甲基丙二酰辅酶A变位酶中钴胺素的自杀性电子转移
Biochemistry. 2004 Jul 6;43(26):8410-7. doi: 10.1021/bi036299q.
4
Purification and properties of dioldehydrase, and enzyme requiring a cobamide coenzyme.二醇脱水酶的纯化与性质,一种需要钴胺酰胺辅酶的酶。
J Biol Chem. 1963 Jul;238:2367-73.
5
The identification of a nucleoside derived from coenzyme B12.一种源自辅酶B12的核苷的鉴定。
J Biol Chem. 1962 Jun;237:1950-2.
6
The identification of a sugar derived from coenzyme B12.
J Biol Chem. 1961 Dec;236:3097-101.
7
Radical carbon skeleton rearrangements: catalysis by coenzyme B12-dependent mutases.自由基碳骨架重排:辅酶B12依赖性变位酶的催化作用
Chem Rev. 2003 Jun;103(6):2083-94. doi: 10.1021/cr0204395.
8
Epimerization at carbon-5' of (5'R)-[5'-2H]adenosylcobalamin by ribonucleoside triphosphate reductase: cysteine 408-independent cleavage of the Co-C5' bond.核糖核苷三磷酸还原酶催化(5'R)-[5'-2H]腺苷钴胺素5'位碳原子的差向异构化:不依赖半胱氨酸408的Co-C5'键断裂
Biochemistry. 2003 Apr 22;42(15):4578-84. doi: 10.1021/bi030018x.
9
Substrate-induced conformational change of a coenzyme B12-dependent enzyme: crystal structure of the substrate-free form of diol dehydratase.辅酶B12依赖性酶的底物诱导构象变化:二醇脱水酶无底物形式的晶体结构
Biochemistry. 2002 Oct 22;41(42):12607-17. doi: 10.1021/bi026104z.
10
A novel reaction between adenosylcobalamin and 2-methyleneglutarate catalyzed by glutamate mutase.由谷氨酸变位酶催化的腺苷钴胺素与2-亚甲基戊二酸之间的新型反应。
Biochemistry. 2002 Mar 5;41(9):3200-6. doi: 10.1021/bi011965d.