利用三元复合物中的光解作用对依赖于腺苷钴胺素的乙醇胺氨裂解酶中钴-碳键断裂催化的蛋白质贡献进行表征。

Characterization of protein contributions to cobalt-carbon bond cleavage catalysis in adenosylcobalamin-dependent ethanolamine ammonia-lyase by using photolysis in the ternary complex.

机构信息

Department of Physics, Emory University, Atlanta, Georgia 30322, USA.

出版信息

J Am Chem Soc. 2011 May 11;133(18):6968-77. doi: 10.1021/ja107052p. Epub 2011 Apr 14.

Abstract

Protein contributions to the substrate-triggered cleavage of the cobalt-carbon (Co-C) bond and formation of the cob(II)alamin-5'-deoxyadenosyl radical pair in the adenosylcobalamin (AdoCbl)-dependent ethanolamine ammonia-lyase (EAL) from Salmonella typhimurium have been studied by using pulsed-laser photolysis of AdoCbl in the EAL-AdoCbl-substrate ternary complex, and time-resolved probing of the photoproduct dynamics by using ultraviolet-visible absorption spectroscopy on the 10(-7)-10(-1) s time scale. Experiments were performed in a fluid dimethylsulfoxide/water cryosolvent system at 240 K, under conditions of kinetic competence for thermal cleavage of the Co-C bond in the ternary complex. The static ultraviolet-visible absorption spectra of holo-EAL and ternary complex are comparable, indicating that the binding of substrate does not labilize the cofactor cobalt-carbon (Co-C) bond by significantly distorting the equilibrium AdoCbl structure. Photolysis of AdoCbl in EAL at 240 K leads to cob(II)alamin-5'-deoxyadenosyl radical pair quantum yields of <0.01 at 10(-6) s in both holo-EAL and ternary complex. Three photoproduct states are populated following a saturating laser pulse, and labeled, P(f), P(s), and P(c). The relative amplitudes and first-order recombination rate constants of P(f) (0.4-0.6; 40-50 s(-1)), P(s) (0.3-0.4; 4 s(-1)), and P(c) (0.1-0.2; 0) are comparable in holo-EAL and in the ternary complex. Time-resolved, full-spectrum electron paramagnetic resonance (EPR) spectroscopy shows that visible irradiation alters neither the kinetics of thermal cob(II)alamin-substrate radical pair formation, nor the equilibrium between ternary complex and cob(II)alamin-substrate radical pair, at 246 K. The results indicate that substrate binding to holo-EAL does not "switch" the protein to a new structural state, which promptly stabilizes the cob(II)alamin-5'-deoxyadenosyl radical pair photoproduct, either through an increased barrier to recombination, a decreased barrier to further radical pair separation, or lowering of the radical pair state free energy, or a combination of these effects. Therefore, we conclude that such a change in protein structure, which is independent of changes in the AdoCbl structure, and specifically the Co-C bond length, is not a basis of Co-C bond cleavage catalysis. The results suggest that, following the substrate trigger, the protein interacts with the cofactor to contiguously guide the cleavage of the Co-C bond, at every step along the cleavage coordinate, starting from the equilibrium configuration of the ternary complex. The cleavage is thus represented by a diagonal trajectory across a free energy surface, that is defined by chemical (Co-C separation) and protein configuration coordinates.

摘要

已通过脉冲激光光解嗜热鼠伤寒沙门氏菌的腺苷钴胺素(AdoCbl)依赖性乙醇胺氨裂解酶(EAL)中的三元复合物中的 AdoCbl,并用紫外-可见吸收光谱在 10(-7)-10(-1)s 时间尺度上对光产物动力学进行时间分辨探测,研究了蛋白质对钴-碳(Co-C)键的底物触发裂解和形成 cob(II)alamin-5'-脱氧腺苷自由基对的贡献。实验在 240 K 下的二甲基亚砜/水低温共溶剂体系中进行,条件为三元复合物中 Co-C 键的热裂解具有动力学能力。全酶和三元复合物的静态紫外-可见吸收光谱相似,表明底物结合不会通过显着扭曲平衡 AdoCbl 结构来使辅因子钴-碳(Co-C)键不稳定。EAL 中的 AdoCbl 在 240 K 下的光解导致全酶和三元复合物中的 cob(II)alamin-5'-脱氧腺苷自由基对量子产率均小于 0.01 在 10(-6)s 时。激光脉冲饱和后,有三个光产物态被填充,并标记为 P(f)、P(s)和 P(c)。在全酶和三元复合物中,P(f)(0.4-0.6;40-50 s(-1))、P(s)(0.3-0.4;4 s(-1))和 P(c)(0.1-0.2;0)的相对幅度和一级重组速率常数是可比的。时间分辨、全谱电子顺磁共振(EPR)光谱表明,在 246 K 时,可见光辐照既不会改变热 cob(II)alamin-底物自由基对形成的动力学,也不会改变三元复合物与 cob(II)alamin-底物自由基对之间的平衡。结果表明,底物结合全酶不会“切换”蛋白质到新的结构状态,该状态立即稳定 cob(II)alamin-5'-脱氧腺苷自由基对光产物,无论是通过增加重组的势垒,降低进一步自由基对分离的势垒,降低自由基对状态自由能,还是这些效应的组合。因此,我们得出结论,这种蛋白质结构的变化,与 AdoCbl 结构的变化无关,特别是 Co-C 键长无关,不是 Co-C 键裂解催化的基础。结果表明,在底物触发后,蛋白质与辅因子相互作用,在沿裂解坐标的每一步连续引导 Co-C 键的裂解,从三元复合物的平衡构型开始。因此,裂解由穿过自由能表面的对角线轨迹表示,该表面由化学(Co-C 分离)和蛋白质构象坐标定义。

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