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大肠杆菌转运核糖核酸二级和三级结构热解链的自旋标记研究

A spin label study of the thermal unfolding of secondary and tertiary structure in E. colic transfer RNAs.

作者信息

Caron M, Dugas H

出版信息

Nucleic Acids Res. 1976 Jan;3(1):35-47. doi: 10.1093/nar/3.1.35.

DOI:10.1093/nar/3.1.35
PMID:175354
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC342875/
Abstract

The molecular mechanism of thermal unfolding of E. coli tRNAGlu, tRNAfMet and tRNAPhe (in 0.02M Tris-HC1, pH 7.5. 10 MM Mg C12) has been examined by the spin-labeling technique. The rate of tumbling of the spin label has been measured as a function of temperature for ten different selectively spin-labeled tRNAs. Only spin labels at position s4U-8 were able to probe the tertiary structure. Evidences are presented which support the hypothesis that the thermal denaturation of the three species of tRNAs studied is sequential. The unfolding process occurs in three discrete stages. The first step (30 degrees-32 degrees) could either be assigned to a localized reorganization of the cold-denatured structure or to a "transient" melting, followed by the simultaneous disruption of the tertiary structure and part of the hU helix. This transition is observed even in the absence of magnesium. The second step (50 degrees-54 degrees) involves the melting of the anticodon and miniloop regions. The last step occurs above 65 degrees where the t psi c and amino acid acceptor stems, forming one continuous double helix, melt. A simple dynamic model is considered for tRNA function in protein biosynthesis.

摘要

通过自旋标记技术研究了大肠杆菌tRNAGlu、tRNAfMet和tRNAPhe(在0.02M Tris-HCl,pH 7.5,10mM MgCl2中)热解折叠的分子机制。对于十种不同的选择性自旋标记tRNA,测量了自旋标记的翻转速率随温度的变化。只有位于s4U-8位置的自旋标记能够探测三级结构。提供的证据支持了所研究的三种tRNA热变性是有序的这一假设。解折叠过程发生在三个离散阶段。第一步(30℃-32℃)要么归因于冷变性结构的局部重组,要么归因于“瞬时”解链,随后是三级结构和部分hU螺旋的同时破坏。即使在没有镁的情况下也能观察到这种转变。第二步(50℃-54℃)涉及反密码子和小环区域的解链。最后一步发生在65℃以上,此时tψc和氨基酸接受茎形成一个连续的双螺旋并解链。考虑了一个关于tRNA在蛋白质生物合成中功能的简单动力学模型。

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Study on conformational states of Escherichia coli tRNAPhe in solution by a modulation-free ESR-spectrometer.利用无调制电子自旋共振光谱仪对溶液中大肠杆菌苯丙氨酸转运核糖核酸构象状态的研究。
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CD spectra of 5-methyl-2-thiouridine in tRNA-Met-f from an extreme thermophile.来自嗜热菌的甲硫氨酸转运核糖核酸(tRNA-Met-f)中5-甲基-2-硫代尿苷的圆二色光谱
Nucleic Acids Res. 1976 Jul;3(7):1703-13. doi: 10.1093/nar/3.7.1703.
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本文引用的文献

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The coupling of conformational transitions in alanine specific transfer ribonucleic acid from yeast studied by a modified differential absorption technique.
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Molecular mechanics of translation: a reciprocating ratchet mechanism.翻译的分子机制:一种往复式棘轮机制。
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Free energy of imperfect nucleic acid helices. II. Small hairpin loops.不完全核酸螺旋的自由能。II. 小发夹环
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The general structure of transfer RNA molecules.转运RNA分子的一般结构。
Proc Natl Acad Sci U S A. 1974 Dec;71(12):4970-4. doi: 10.1073/pnas.71.12.4970.
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The molecular mechanism of thermal unfolding of Escherichia coli formylmethionine transfer RNA.大肠杆菌甲酰甲硫氨酸转移核糖核酸热解折叠的分子机制。
J Mol Biol. 1974 Jul 25;87(1):63-88. doi: 10.1016/0022-2836(74)90560-9.
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Conformational transitions in tRNA Asp (brewer's yeast). Thermodynamic, kinetic, and enzymatic measurements on oligonucleotide fragments and the intact molecule.
Biochemistry. 1974 Sep 10;13(19):3938-48. doi: 10.1021/bi00716a019.