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解脂海岸杆菌科,新科,包含解脂海岸杆菌属,新属,新种,一种属于海螺旋菌目的海洋细菌。

Litoricolaceae fam. nov., to include Litoricola lipolytica gen. nov., sp. nov., a marine bacterium belonging to the order Oceanospirillales.

作者信息

Kim Hana, Choo Yoe-Jin, Cho Jang-Cheon

机构信息

Division of Biology and Ocean Sciences, Inha University, Namgu, Incheon 402-751, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2007 Aug;57(Pt 8):1793-1798. doi: 10.1099/ijs.0.65059-0.

Abstract

A Gram-negative, non-motile, chemoheterotrophic, facultatively aerobic, short-rod-shaped bacterium, designated IMCC1097(T), was isolated from coastal seawater (10 m depth) of the East Sea, Korea. The temperature, pH and NaCl ranges for growth were 15-30 degrees C, pH 5.0-10.0 and 1.5-10 % NaCl. The colonies of the strain were very small, having a mean diameter of 0.05 mm. 16S rRNA gene sequence data indicated that the strain was most closely related to genera within the class Gammaproteobacteria. Members of the most closely related genera showed less than 90 % sequence similarity and included Saccharospirillum (89.3 %), Oleiphilus (88.7 %), Reinekea (88.2 %), Alcanivorax (86.4-87.6 %) and Zooshikella (87.6 %), which represent five different families of the order Oceanospirillales. Phylogenetic analyses showed that this marine strain represented a distinct phylogenetic lineage in the order Oceanospirillales and could not be assigned to any of the defined families in the order. The predominant fatty acids were C(16 : 1) omega 7c and/or iso-C(15 : 0) 2-OH, C(18 : 1) omega 7c and C(10 : 0) 3-OH, and the DNA G+C content was 57.9 mol%. These chemotaxonomic properties, together with phenotypic characteristics, served to differentiate the strain from phylogenetically closely related genera. The very low sequence similarities (<90 %) and distant relationships between IMCC1097(T) and members of the order Oceanospirillales suggested that the strain merited classification within a novel genus within a novel family in the order. On the basis of taxonomic evidence collected in this study, a novel genus and species are proposed, Litoricola lipolytica gen. nov., sp. nov., within a new family Litoricolaceae fam. nov. Strain IMCC1097(T) (=KCCM 42360(T) =NBRC 102074(T)) is the type strain of Litoricola lipolytica.

摘要

从韩国东海10米深处的沿海海水中分离出一株革兰氏阴性、无运动性、化能异养、兼性需氧、短杆状细菌,命名为IMCC1097(T)。该菌株生长的温度范围为15-30℃,pH范围为5.0-10.0,NaCl浓度范围为1.5-10%。该菌株的菌落非常小,平均直径为0.05毫米。16S rRNA基因序列数据表明,该菌株与γ-变形菌纲内的属关系最为密切。关系最密切的属的成员显示出低于90%的序列相似性,包括嗜糖螺旋菌属(89.3%)、嗜油菌属(88.7%)、雷内克氏菌属(88.2%)、食烷菌属(86.4-87.6%)和佐氏菌属(87.6%),它们代表了海洋螺菌目的五个不同科。系统发育分析表明,该海洋菌株在海洋螺菌目中代表一个独特的系统发育谱系,不能归入该目中任何一个已定义的科。主要脂肪酸为C(16 : 1) ω7c和/或异-C(15 : 0) 2-OH、C(18 : 1) ω7c和C(10 : 0) 3-OH,DNA G+C含量为57.9 mol%。这些化学分类学特性与表型特征一起,有助于将该菌株与系统发育关系密切的属区分开来。IMCC1097(T)与海洋螺菌目成员之间非常低的序列相似性(<90%)和较远的关系表明,该菌株应归入该目一个新科内的一个新属。根据本研究收集的分类学证据,提出了一个新属和新种,解脂海岸菌属(Litoricola lipolytica),属于一个新科海岸菌科(Litoricolaceae)。菌株IMCC1097(T)(=KCCM 42360(T) =NBRC 102074(T))是解脂海岸菌的模式菌株。

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