Lee Kiyoung, Lee Hong Kum, Choi Tae-Hwan, Kim Kyung-Mi, Cho Jang-Cheon
Division of Biology and Ocean Sciences, Inha University, Incheon 402-751, Korea.
J Microbiol Biotechnol. 2007 Sep;17(9):1483-90.
A Gram-negative, motile by tuft flagella, obligately aerobic chemoorganoheterotrophic, sphere-form bacterium, designated IMCC3135(T), was isolated from the Antarctic surface seawater of King George Island, West Antarctica. The strain was mesophilic, neutrophilic, and requiring NaCl for growth, but neither halophilic nor halotolerant. The 16S rRNA gene sequence analysis indicated that the strain was most closely related to genera of the order Chromatiales in the class Gammaproteobacteria. The most closely related genera showed less than 90% 16S rRNA gene sequence similarity and included Thioalkalispira (89.9%), Thioalkalivibrio (88.0%-89.5%), Ectothiorhodospira (87.9%-89.3%), Chromatium (88.3%-88.9%), and Lamprocystis (87.7%-88.9%), which represent three different families of the order Chromatiales. Phylogenetic analyses showed that this Antarctic strain represented a distinct phylogenetic lineage in the order Chromatiales and could not be assigned to any of the defined families in the order. Phenotypic characteristics, including primarily non-phototrophic, non-alkaliphilic, non-halophilic, and obligately aerobic chemoheterotrophic properties, differentiated the strain from other related genera. The very low sequence similarities (<90%) and distant relationships between the strain and members of the order suggested that the strain merited classification as a novel genus within a novel family in the order Chromatiales. On the basis of these taxonomic traits, a novel genus and species is proposed, Granulosicoccus antarcticus gen. nov., sp. nov., in a new family Granulosicoccaceae fam. nov. Strain IMCC3135(T) (=KCCM 42676(T)=NBRC 102684(T)) is the type strain of Granulosicoccus antarcticus.
从南极乔治王岛的南极表层海水中分离出一株革兰氏阴性、具丛生鞭毛、专性需氧的化能有机异养球形细菌,命名为IMCC3135(T)。该菌株为嗜温菌、嗜中性菌,生长需要NaCl,但既非嗜盐菌也非耐盐菌。16S rRNA基因序列分析表明,该菌株与γ-变形菌纲着色菌目各属关系最为密切。关系最密切的属16S rRNA基因序列相似性低于90%,包括硫碱螺旋菌属(89.9%)、硫碱弧菌属(88. — 89.5%)、外硫红螺菌属(87.9% — 89.3%)、着色菌属(88.3% — 88.9%)和亮囊硫菌属(87.7% — 88.9%),它们代表着色菌目的三个不同科。系统发育分析表明,这株南极菌株在着色菌目中代表一个独特的系统发育谱系,不能归入该目中任何一个已定义的科。包括主要非光合、非嗜碱、非嗜盐和专性需氧化能异养特性在内的表型特征,使该菌株与其他相关属区分开来。该菌株与该目成员之间非常低的序列相似性(<90%)及较远的关系表明,该菌株应归为着色菌目中一个新科内的一个新属。基于这些分类学特征,提出一个新属和新种,南极颗粒球菌Granulosicoccus antarcticus gen. nov., sp. nov.,置于新科颗粒球菌科Granulosicoccaceae fam. nov.。菌株IMCC3135(T)(=KCCM 42676(T)=NBRC 102684(T))是南极颗粒球菌的模式菌株。