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对噬菌体λ中单个DNA分子包装动力学的测量揭示了高作用力、高马达持续性和衣壳转变。

Measurements of single DNA molecule packaging dynamics in bacteriophage lambda reveal high forces, high motor processivity, and capsid transformations.

作者信息

Fuller Derek N, Raymer Dorian M, Rickgauer John Peter, Robertson Rae M, Catalano Carlos E, Anderson Dwight L, Grimes Shelley, Smith Douglas E

机构信息

Department of Physics, University of California, San Diego, Mail Code 0379, 9500 Gilman Drive, La Jolla, CA 92093, USA.

出版信息

J Mol Biol. 2007 Nov 9;373(5):1113-22. doi: 10.1016/j.jmb.2007.09.011. Epub 2007 Sep 11.

Abstract

Molecular motors drive genome packaging into preformed procapsids in many double-stranded (ds)DNA viruses. Here, we present optical tweezers measurements of single DNA molecule packaging in bacteriophage lambda. DNA-gpA-gpNu1 complexes were assembled with recombinant gpA and gpNu1 proteins and tethered to microspheres, and procapsids were attached to separate microspheres. DNA binding and initiation of packaging were observed within a few seconds of bringing these microspheres into proximity in the presence of ATP. The motor was observed to generate greater than 50 picoNewtons (pN) of force, in the same range as observed with bacteriophage phi29, suggesting that high force generation is a common property of viral packaging motors. However, at low capsid filling the packaging rate averaged approximately 600 bp/s, which is 3.5-fold higher than phi29, and the motor processivity was also threefold higher, with less than one slip per genome length translocated. The packaging rate slowed significantly with increasing capsid filling, indicating a buildup of internal force reaching 14 pN at 86% packaging, in good agreement with the force driving DNA ejection measured in osmotic pressure experiments and calculated theoretically. Taken together, these experiments show that the internal force that builds during packaging is largely available to drive subsequent DNA ejection. In addition, we observed an 80 bp/s dip in the average packaging rate at 30% packaging, suggesting that procapsid expansion occurs at this point following the buildup of an average of 4 pN of internal force. In experiments with a DNA construct longer than the wild-type genome, a sudden acceleration in packaging rate was observed above 90% packaging, and much greater than 100% of the genome length was translocated, suggesting that internal force can rupture the immature procapsid, which lacks an accessory protein (gpD).

摘要

在许多双链(ds)DNA病毒中,分子马达驱动基因组包装进预先形成的原衣壳。在此,我们展示了利用光镊对噬菌体λ中单个DNA分子包装过程的测量。DNA - gpA - gpNu1复合物由重组gpA和gpNu1蛋白组装而成,并连接到微球上,原衣壳则连接到单独的微球上。在ATP存在的情况下,将这些微球靠近后几秒钟内就观察到了DNA结合和包装起始。观察到该马达产生的力大于50皮牛顿(pN),与噬菌体φ29观察到的力在同一范围内,这表明产生高力是病毒包装马达的共同特性。然而,在衣壳填充率较低时,包装速率平均约为600碱基对/秒,这比φ29高3.5倍,并且马达的持续性也高三倍,每转运一个基因组长度的滑移少于一次。随着衣壳填充率增加,包装速率显著减慢,表明内部力逐渐积累,在86%包装时达到14 pN,这与渗透压实验中测量并经理论计算的驱动DNA喷出的力高度吻合。综上所述,这些实验表明包装过程中积累的内部力在很大程度上可用于驱动后续的DNA喷出。此外,我们观察到在30%包装时平均包装速率出现80碱基对/秒的下降,这表明在平均积累4 pN的内部力后,此时原衣壳发生了膨胀。在用比野生型基因组更长的DNA构建体进行的实验中,在超过90%包装时观察到包装速率突然加速,并且转运的长度远超过基因组长度的100%,这表明内部力可以使缺乏辅助蛋白(gpD)的未成熟原衣壳破裂。

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本文引用的文献

1
Real-time observations of single bacteriophage lambda DNA ejections in vitro.
Proc Natl Acad Sci U S A. 2007 Sep 11;104(37):14652-7. doi: 10.1073/pnas.0703274104. Epub 2007 Sep 5.
2
Packaging of DNA by bacteriophage epsilon15: structure, forces, and thermodynamics.
Structure. 2007 Jul;15(7):807-12. doi: 10.1016/j.str.2007.05.005.
3
Ionic effects on viral DNA packaging and portal motor function in bacteriophage phi 29.
Proc Natl Acad Sci U S A. 2007 Jul 3;104(27):11245-50. doi: 10.1073/pnas.0701323104. Epub 2007 Jun 7.
4
Structural and thermodynamic principles of viral packaging.
Structure. 2007 Jan;15(1):21-7. doi: 10.1016/j.str.2006.11.013.
5
Assembly of bacteriophage lambda terminase into a viral DNA maturation and packaging machine.
Biochemistry. 2006 Dec 26;45(51):15259-68. doi: 10.1021/bi0615036. Epub 2006 Nov 30.
6
DNA as a metrology standard for length and force measurements with optical tweezers.
Biophys J. 2006 Dec 1;91(11):4253-7. doi: 10.1529/biophysj.106.089524. Epub 2006 Sep 8.
8
The effect of genome length on ejection forces in bacteriophage lambda.
Virology. 2006 May 10;348(2):430-6. doi: 10.1016/j.virol.2006.01.003. Epub 2006 Feb 15.
9
A general method for manipulating DNA sequences from any organism with optical tweezers.
Nucleic Acids Res. 2006 Feb 1;34(2):e15. doi: 10.1093/nar/gnj016.
10
Mechanism of force generation of a viral DNA packaging motor.
Cell. 2005 Sep 9;122(5):683-92. doi: 10.1016/j.cell.2005.06.024.

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