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单个噬菌体T4 DNA包装马达表现出强大的力产生、高速度和动态变异性。

Single phage T4 DNA packaging motors exhibit large force generation, high velocity, and dynamic variability.

作者信息

Fuller Derek N, Raymer Dorian M, Kottadiel Vishal I, Rao Venigalla B, Smith Douglas E

机构信息

Department of Physics, University of California at San Diego, La Jolla, CA 92093, USA.

出版信息

Proc Natl Acad Sci U S A. 2007 Oct 23;104(43):16868-73. doi: 10.1073/pnas.0704008104. Epub 2007 Oct 17.

Abstract

Terminase enzyme complexes, which facilitate ATP-driven DNA packaging in phages and in many eukaryotic viruses, constitute a wide and potentially diverse family of molecular motors about which little dynamic or mechanistic information is available. Here we report optical tweezers measurements of single DNA molecule packaging dynamics in phage T4, a large, tailed Escherichia coli virus that is an important model system in molecular biology. We show that a complex is formed between the empty prohead and the large terminase protein (gp17) that can capture and begin packaging a target DNA molecule within a few seconds, thus demonstrating a distinct viral assembly pathway. The motor generates forces >60 pN, similar to those measured with phage phi29, suggesting that high force generation is a common property of viral DNA packaging motors. However, the DNA translocation rate for T4 was strikingly higher than that for phi29, averaging approximately 700 bp/s and ranging up to approximately 2,000 bp/s, consistent with packaging by phage T4 of an enormous, 171-kb genome in <10 min during viral infection and implying high ATP turnover rates of >300 s(-1). The motor velocity decreased with applied load but averaged 320 bp/s at 45 pN, indicating very high power generation. Interestingly, the motor also exhibited large dynamic changes in velocity, suggesting that it can assume multiple active conformational states gearing different translocation rates. This capability, in addition to the reversible pausing and slipping capabilities that were observed, may allow phage T4 to coordinate DNA packaging with other ongoing processes, including viral DNA transcription, recombination, and repair.

摘要

末端酶复合物能够促进噬菌体和许多真核病毒中由ATP驱动的DNA包装,它构成了一个广泛且可能具有多样性的分子马达家族,目前关于其动力学或机制信息知之甚少。在此,我们报告了利用光镊对噬菌体T4中单个DNA分子包装动力学的测量结果,噬菌体T4是一种大型的、有尾的大肠杆菌病毒,是分子生物学中的重要模型系统。我们发现,空的原头部与大型末端酶蛋白(gp17)之间形成了一种复合物,该复合物能够在几秒钟内捕获并开始包装目标DNA分子,从而证明了一种独特的病毒组装途径。该马达产生的力>60 pN,与用噬菌体phi29测量的力相似,这表明高力产生是病毒DNA包装马达的共同特性。然而,T4的DNA转运速率明显高于phi29,平均约为700 bp/s,最高可达约2000 bp/s,这与噬菌体T4在病毒感染期间不到10分钟内包装一个巨大的171-kb基因组一致,意味着ATP周转速率>300 s(-1)。马达速度随施加的负载而降低,但在45 pN时平均为320 bp/s,表明产生的功率非常高。有趣的是,该马达在速度上也表现出很大的动态变化,这表明它可以呈现多种活跃的构象状态,从而适应不同的转运速率。除了观察到的可逆暂停和滑动能力外,这种能力可能使噬菌体T4能够将DNA包装与其他正在进行的过程协调起来,包括病毒DNA转录、重组和修复。

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