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从石鳖中分离出的海洋细菌——足刺棘杆菌新属、新种,以及酸杆菌门中棘杆菌科新科、棘杆菌目新目、全噬菌科新科、全噬菌目新目和全噬菌纲新纲的描述

Acanthopleuribacter pedis gen. nov., sp. nov., a marine bacterium isolated from a chiton, and description of Acanthopleuribacteraceae fam. nov., Acanthopleuribacterales ord. nov., Holophagaceae fam. nov., Holophagales ord. nov. and Holophagae classis nov. in the phylum 'Acidobacteria'.

作者信息

Fukunaga Yukiyo, Kurahashi Midori, Yanagi Kensuke, Yokota Akira, Harayama Shigeaki

机构信息

NITE Biological Resource Center (NBRC), National Institute of Technology and Evaluation (NITE), 2-5-8 Kazusa-Kamatari, Kisarazu-shi, Chiba 292-0818, Japan.

出版信息

Int J Syst Evol Microbiol. 2008 Nov;58(Pt 11):2597-601. doi: 10.1099/ijs.0.65589-0.

Abstract

Strain FYK2218(T) was isolated from a specimen of the chiton Acanthopleura japonica, which had been collected from a beach on the Boso peninsula in Japan. Phylogenetic analyses based on 16S rRNA gene sequences revealed that the strain belonged to the phylum 'Acidobacteria'. The most closely related type strains to strain FYK2218(T) were Holophaga foetida TMBS4(T) (83.6 % 16S rRNA gene sequence similarity) and Geothrix fermentans H-5(T) (83.6 %) in subdivision 8 of the 'Acidobacteria'. Cells of FYK2218(T) were motile, rod-shaped, Gram-negative, mesophilic and strictly aerobic. The G+C content of the strain was 56.7 mol%. The strain had isoprenoid quinones MK-6 and MK-7 as major components. Major fatty acids of the strain were iso-C(15 : 0), iso-C(17 : 0), C(16 : 0) and C(20 : 5)omega3c (cis-5,8,11,14,17-eicosapentaenoic acid). From the taxonomic data obtained in this study, it is proposed that the new marine isolate be placed into a novel genus and species named Acanthopleuribacter pedis gen. nov., sp. nov. within the new family, order and class Acanthopleuribacteraceae fam. nov., Acanthopleuribacterales ord. nov. and Holophagae classis nov. The family Holophagaceae fam. nov. is also described. The type strain of Acanthopleuribacter pedis is FYK2218(T) (=NBRC 101209(T) =KCTC 12899(T)).

摘要

菌株FYK2218(T)是从日本矶沙蚕(Acanthopleura japonica)的一个样本中分离得到的,该样本采自日本房总半岛的一个海滩。基于16S rRNA基因序列的系统发育分析表明,该菌株属于“酸杆菌门”。与菌株FYK2218(T)关系最密切的模式菌株是“酸杆菌门”第8亚群中的恶臭全噬菌(Holophaga foetida)TMBS4(T)(16S rRNA基因序列相似性为83.6%)和发酵土栖菌(Geothrix fermentans)H-5(T)(83.6%)。FYK2218(T)的细胞具运动性,杆状,革兰氏阴性,嗜温,严格需氧。该菌株的G+C含量为56.7 mol%。该菌株以异戊二烯醌MK-6和MK-7为主要成分。该菌株的主要脂肪酸为异C(15 : 0)、异C(17 : 0)、C(16 : 0)和C(20 : 5)ω3c(顺式-5,8,11,14,17-二十碳五烯酸)。根据本研究获得的分类学数据,建议将该新的海洋分离株归入一个新的属和种,命名为足部棘沙蚕杆菌(Acanthopleuribacter pedis),新属,新种,属于新科、新目和新纲棘沙蚕杆菌科(Acanthopleuribacteraceae)、棘沙蚕杆菌目(Acanthopleuribacterales)和全噬菌纲(Holophagae)。还描述了新科全噬菌科(Holophagaceae)。足部棘沙蚕杆菌的模式菌株为FYK2218(T)(=NBRC 101209(T) =KCTC 12899(T))。

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