嗜一氧化碳寡营养菌OM5T的基因组序列
Genome sequence of the chemolithoautotrophic bacterium Oligotropha carboxidovorans OM5T.
作者信息
Paul Debarati, Bridges Susan, Burgess Shane C, Dandass Yoginder, Lawrence Mark L
机构信息
College of Veterinary Medicine, Mississippi State University, Mississippi State, Mississippi 39762, USA.
出版信息
J Bacteriol. 2008 Aug;190(15):5531-2. doi: 10.1128/JB.00614-08. Epub 2008 Jun 6.
Abstract
Oligotropha carboxidovorans OM5(T) (DSM 1227, ATCC 49405) is a chemolithoautotrophic bacterium with the capability to utilize carbon monoxide, carbon dioxide, and hydrogen. It is also capable of heterotrophic growth under appropriate environmental conditions. Here we report the annotated genome sequence of the circular chromosome of this organism.
摘要
嗜羧寡养菌OM5(T)（DSM 1227，ATCC 49405）是一种化能无机自养细菌，能够利用一氧化碳、二氧化碳和氢气。在适宜的环境条件下，它也能进行异养生长。在此，我们报告该生物体环状染色体的注释基因组序列。
相似文献
1
Genome sequence of the chemolithoautotrophic bacterium Oligotropha carboxidovorans OM5T.嗜一氧化碳寡营养菌OM5T的基因组序列
J Bacteriol. 2008 Aug;190(15):5531-2. doi: 10.1128/JB.00614-08. Epub 2008 Jun 6.
2
Complete genome and comparative analysis of the chemolithoautotrophic bacterium Oligotropha carboxidovorans OM5.化能自养菌 Oligotropha carboxidovorans OM5 的全基因组及比较基因组分析。
BMC Genomics. 2010 Sep 23;11:511. doi: 10.1186/1471-2164-11-511.
3
Complete genome sequences of the chemolithoautotrophic Oligotropha carboxidovorans strains OM4 and OM5.化学自养型寡养单胞菌 OM4 和 OM5 菌株的全基因组序列。
J Bacteriol. 2011 Sep;193(18):5043. doi: 10.1128/JB.05619-11. Epub 2011 Jul 8.
4
Proteome and membrane fatty acid analyses on Oligotropha carboxidovorans OM5 grown under chemolithoautotrophic and heterotrophic conditions.在化自养和异养条件下对寡养单胞菌 OM5 的蛋白质组和膜脂肪酸分析。
PLoS One. 2011 Feb 28;6(2):e17111. doi: 10.1371/journal.pone.0017111.
5
Genome sequence of the newly isolated chemolithoautotrophic Bradyrhizobiaceae strain SG-6C.新分离的化能自养慢生根瘤菌 SG-6C 菌株的基因组序列。
J Bacteriol. 2011 Sep;193(18):5057. doi: 10.1128/JB.05647-11. Epub 2011 Jul 8.
6
Genetic Engineering of Strain OM5-A Promising Candidate for the Aerobic Utilization of Synthesis Gas.利用合成气的好氧利用：OM5-A 菌株的遗传工程。
ACS Synth Biol. 2020 Jun 19;9(6):1426-1440. doi: 10.1021/acssynbio.0c00098. Epub 2020 May 19.
7
Structure of O-specific polysaccharide of Oligotropha carboxidovorans OM5 - a wastewater bacterium.嗜羧寡养单胞菌OM5（一种废水细菌）O-特异性多糖的结构
Carbohydr Res. 2017 Feb 1;439:30-34. doi: 10.1016/j.carres.2017.01.001. Epub 2017 Jan 3.
8
Complete nucleotide sequence of the circular megaplasmid pHCG3 of Oligotropha carboxidovorans: function in the chemolithoautotrophic utilization of CO, H(2) and CO(2).食羧寡养单胞菌环状大质粒pHCG3的完整核苷酸序列：在CO、H₂和CO₂的化能自养利用中的功能
Gene. 2003 Dec 11;322:67-75. doi: 10.1016/j.gene.2003.08.027.
9
Lipid A from Lipopolysaccharide That Contains Two Galacturonic Acid Residues in the Backbone and Malic Acid A Tertiary Acyl Substituent.含有两个位于主链上的半乳糖醛酸残基和一个马来酸 tertiary 酰基取代基的脂多糖中的脂 A。
Int J Mol Sci. 2020 Oct 27;21(21):7991. doi: 10.3390/ijms21217991.
10
Molecular characterization of the gene cluster coxMSL encoding the molybdenum-containing carbon monoxide dehydrogenase of Oligotropha carboxidovorans.嗜羧寡养单胞菌含钼一氧化碳脱氢酶的coxMSL基因簇的分子特征分析
J Bacteriol. 1995 Apr;177(8):2197-203. doi: 10.1128/jb.177.8.2197-2203.1995.
引用本文的文献
1
Using gas mixtures of CO, CO and H as microbial substrates: the do's and don'ts of successful technology transfer from laboratory to production scale.利用 CO、CO 和 H 的混合气体作为微生物基质：从实验室到生产规模成功技术转移的注意事项。
Microb Biotechnol. 2018 Jul;11(4):606-625. doi: 10.1111/1751-7915.13270. Epub 2018 May 14.
2
Niche distribution and influence of environmental parameters in marine microbial communities: a systematic review.海洋微生物群落中生态位分布及环境参数的影响：一项系统综述
PeerJ. 2015 Jun 16;3:e1008. doi: 10.7717/peerj.1008. eCollection 2015.
3
A general framework of persistence strategies for biological systems helps explain domains of life.一个生物系统持久性策略的通用框架有助于解释生命领域。
Front Genet. 2013 Feb 25;4:16. doi: 10.3389/fgene.2013.00016. eCollection 2013.
4
The CoxD protein, a novel AAA+ ATPase involved in metal cluster assembly: hydrolysis of nucleotide-triphosphates and oligomerization.CoxD 蛋白，一种新型的 AAA+ ATP 酶，参与金属簇组装：核苷酸三磷酸的水解和寡聚化。
PLoS One. 2012;7(10):e47424. doi: 10.1371/journal.pone.0047424. Epub 2012 Oct 15.
5
Complete genome sequences of the chemolithoautotrophic Oligotropha carboxidovorans strains OM4 and OM5.化学自养型寡养单胞菌 OM4 和 OM5 菌株的全基因组序列。
J Bacteriol. 2011 Sep;193(18):5043. doi: 10.1128/JB.05619-11. Epub 2011 Jul 8.
6
Proteome and membrane fatty acid analyses on Oligotropha carboxidovorans OM5 grown under chemolithoautotrophic and heterotrophic conditions.在化自养和异养条件下对寡养单胞菌 OM5 的蛋白质组和膜脂肪酸分析。
PLoS One. 2011 Feb 28;6(2):e17111. doi: 10.1371/journal.pone.0017111.
7
Complete genome and comparative analysis of the chemolithoautotrophic bacterium Oligotropha carboxidovorans OM5.化能自养菌 Oligotropha carboxidovorans OM5 的全基因组及比较基因组分析。
BMC Genomics. 2010 Sep 23;11:511. doi: 10.1186/1471-2164-11-511.
8
Biodegradation of 5-nitroanthranilic acid by Bradyrhizobium sp. strain JS329.布拉氏固氮菌（Bradyrhizobium sp. strain JS329）对 5-硝基邻氨基苯甲酸的生物降解。
Appl Environ Microbiol. 2010 Mar;76(5):1417-22. doi: 10.1128/AEM.02816-09. Epub 2010 Jan 15.
9
The CoxD protein of Oligotropha carboxidovorans is a predicted AAA+ ATPase chaperone involved in the biogenesis of the CO dehydrogenase [CuSMoO2] cluster.嗜羧寡养菌的CoxD蛋白是一种预测的AAA+ATP酶伴侣蛋白，参与一氧化碳脱氢酶[CuSMoO2]簇的生物合成。
J Biol Chem. 2009 Apr 3;284(14):9578-86. doi: 10.1074/jbc.M805354200. Epub 2009 Feb 2.
10
The quest for biofuels fuels genome sequencing.对生物燃料的追求推动了基因组测序。
Environ Microbiol. 2008 Oct;10(10):2471-5. doi: 10.1111/j.1462-2920.2008.01754.x.
本文引用的文献
1
Microbiology of synthesis gas fermentation for biofuel production.用于生物燃料生产的合成气发酵微生物学。
Curr Opin Biotechnol. 2007 Jun;18(3):200-6. doi: 10.1016/j.copbio.2007.03.008. Epub 2007 Mar 30.
2
Complete nucleotide sequence of the circular megaplasmid pHCG3 of Oligotropha carboxidovorans: function in the chemolithoautotrophic utilization of CO, H(2) and CO(2).食羧寡养单胞菌环状大质粒pHCG3的完整核苷酸序列：在CO、H₂和CO₂的化能自养利用中的功能
Gene. 2003 Dec 11;322:67-75. doi: 10.1016/j.gene.2003.08.027.
3
Improved microbial gene identification with GLIMMER.利用GLIMMER改进微生物基因识别。
Nucleic Acids Res. 1999 Dec 1;27(23):4636-41. doi: 10.1093/nar/27.23.4636.
4
Reisolation of the carbon monoxide utilizing hydrogen bacterium Pseudomonas carboxydovorans (Kistner) comb. nov.利用一氧化碳利用氢细菌新组合羧基食一氧化碳假单胞菌（基斯特纳）重新分离出一氧化碳
Arch Microbiol. 1978 Jul;118(1):35-43. doi: 10.1007/BF00406071.
Zotero 插件