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在一个最小群体感应基序中通过扩散耗散实现降噪

Noise reduction by diffusional dissipation in a minimal quorum sensing motif.

作者信息

Tanouchi Yu, Tu Dennis, Kim Jungsang, You Lingchong

机构信息

Department of Biomedical Engineering, Duke University, Durham, North Carolina, United States of America.

出版信息

PLoS Comput Biol. 2008 Aug 29;4(8):e1000167. doi: 10.1371/journal.pcbi.1000167.

Abstract

Cellular interactions are subject to random fluctuations (noise) in quantities of interacting molecules. Noise presents a major challenge for the robust function of natural and engineered cellular networks. Past studies have analyzed how noise is regulated at the intracellular level. Cell-cell communication, however, may provide a complementary strategy to achieve robust gene expression by enabling the coupling of a cell with its environment and other cells. To gain insight into this issue, we have examined noise regulation by quorum sensing (QS), a mechanism by which many bacteria communicate through production and sensing of small diffusible signals. Using a stochastic model, we analyze a minimal QS motif in Gram-negative bacteria. Our analysis shows that diffusion of the QS signal, together with fast turnover of its transcriptional regulator, attenuates low-frequency components of extrinsic noise. We term this unique mechanism "diffusional dissipation" to emphasize the importance of fast signal turnover (or dissipation) by diffusion. We further show that this noise attenuation is a property of a more generic regulatory motif, of which QS is an implementation. Our results suggest that, in a QS system, an unstable transcriptional regulator may be favored for regulating expression of costly proteins that generate public goods.

摘要

细胞间相互作用会受到相互作用分子数量的随机波动(噪声)影响。噪声对天然和工程细胞网络的稳健功能构成重大挑战。过去的研究分析了细胞内水平上噪声是如何被调控的。然而,细胞间通讯可能提供一种互补策略,通过使细胞与其环境及其他细胞耦合来实现稳健的基因表达。为深入了解这一问题,我们研究了群体感应(QS)对噪声的调控,群体感应是许多细菌通过产生和感知可扩散小信号进行通讯的一种机制。我们使用一个随机模型分析了革兰氏阴性菌中的一个最小群体感应基序。我们的分析表明,群体感应信号的扩散及其转录调节因子的快速周转,减弱了外在噪声的低频成分。我们将这种独特机制称为“扩散耗散”,以强调通过扩散实现快速信号周转(或耗散)的重要性。我们进一步表明,这种噪声衰减是一种更通用调节基序的特性,群体感应是其一种具体实现方式。我们的结果表明,在群体感应系统中,不稳定的转录调节因子可能有利于调控产生公共物品的昂贵蛋白质的表达。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/10fc/2507755/ace561675657/pcbi.1000167.g001.jpg

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