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健康与疾病的系统理论框架:从抽象建模角度看炎症与预处理

A systems-theoretical framework for health and disease: inflammation and preconditioning from an abstract modeling point of view.

作者信息

Voit Eberhard O

机构信息

Integrative BioSystems Institute, The Wallace H. Coulter Department of Biomedical Engineering, Atlanta, GA 30332-0535, USA.

出版信息

Math Biosci. 2009 Jan;217(1):11-8. doi: 10.1016/j.mbs.2008.09.005. Epub 2008 Sep 27.

Abstract

Modern advances in molecular biology have produced enormous amounts of data characterizing physiological and disease states in cells and organisms. While bioinformatics has facilitated the organizing and mining of these data, it is the task of systems biology to merge the available information into dynamic, explanatory and predictive models. This article takes a step into this direction. It proposes a conceptual approach toward formalizing health and disease and illustrates it in the context of inflammation and preconditioning. Instead of defining health and disease states, the emphasis is on simplexes in a high-dimensional biomarker space. These simplexes are bounded by physiological constraints and permit the quantitative characterization of personalized health trajectories, health risk profiles that change with age, and the efficacy of different treatment options. The article mainly focuses on concepts but also briefly describes how the proposed concepts might be formulated rigorously within a mathematical framework.

摘要

分子生物学的现代进展产生了大量描述细胞和生物体生理及疾病状态的数据。虽然生物信息学有助于这些数据的整理和挖掘,但将现有信息整合到动态、解释性和预测性模型中则是系统生物学的任务。本文朝着这个方向迈出了一步。它提出了一种将健康和疾病形式化的概念方法,并在炎症和预处理的背景下进行了说明。重点不在于定义健康和疾病状态,而是高维生物标志物空间中的单纯形。这些单纯形受生理限制所界定,并允许对个性化健康轨迹、随年龄变化的健康风险概况以及不同治疗方案的疗效进行定量表征。本文主要关注概念,但也简要描述了如何在数学框架内严格地阐述所提出的概念。

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Computational systems analysis of dopamine metabolism.多巴胺代谢的计算系统分析
PLoS One. 2008 Jun 18;3(6):e2444. doi: 10.1371/journal.pone.0002444.
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Translational systems biology of inflammation.炎症的转化系统生物学
PLoS Comput Biol. 2008 Apr 25;4(4):e1000014. doi: 10.1371/journal.pcbi.1000014.
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Bioactive sphingolipids in the modulation of the inflammatory response.生物活性鞘脂对炎症反应的调节作用
Pharmacol Ther. 2006 Oct;112(1):171-83. doi: 10.1016/j.pharmthera.2006.04.004. Epub 2006 Jun 8.

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