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河口湖栖 luteimonas 新种,从潮滩沉积物中分离得到。

Luteimonas aestuarii sp. nov., isolated from tidal flat sediment.

作者信息

Roh Seong Woon, Kim Kyoung-Ho, Nam Young-Do, Chang Ho-Won, Kim Min-Soo, Yoon Jung-Hoon, Oh Hee-Mock, Bae Jin-Woo

机构信息

University of Science and Technology, Daejeon 305-333, Republic of Korea.

出版信息

J Microbiol. 2008 Oct;46(5):525-9. doi: 10.1007/s12275-008-0189-9. Epub 2008 Oct 31.

DOI:10.1007/s12275-008-0189-9
PMID:18974953
Abstract

A novel bacterium B9(T) was isolated from tidal flat sediment. Its morphology, physiology, biochemical features, and 16S rRNA gene sequence were characterized. Colonies of this strain are yellow and the cells are Gram-negative, rod-shaped, and do not require NaCl for growth. The 16S rRNA gene sequence similarity indicated that strain B9(T) is associated with the genus Lysobacter (< or = 97.2%), Xanthomonas (< or = 96.8%), Pseudomonas (< or = 96.7%), and Luteimonas (< or = 96.0%). However, within the phylogenetic tree, this novel strain shares a branching point with the species Luteimonas composti CC-YY255(T) (96.0%). The DNA-DNA hybridization experiments showed a DNA-DNA homology of 23.0% between strain B9(T) and Luteimonas mephitis B1953/27.1(T). The G+C content of genomic DNA of the type strain is 64.7 mol% (SD, 1.1). The predominant fatty acids are iso-C(11:0), iso-C(15:0), iso-C(16:0), iso-C(17:0), iso-C(17:0) omega9c, and iso-C(11:0) 3-OH. Combined analysis of the 16S rRNA gene sequences, fatty acid profile, and results from physiological and biochemical tests indicated that there is genotypic and phenotypic differentiation of the isolate from other Luteimonas species. For these reasons, strain B9(T) was proposed as a novel species, named Luteimonas aestuarii. The type strain of the new species is B9(T) (= KCTC 22048(T), DSM 19680(T)).

摘要

从潮滩沉积物中分离出一种新型细菌B9(T)。对其形态、生理、生化特征及16S rRNA基因序列进行了表征。该菌株的菌落为黄色,细胞为革兰氏阴性、杆状,生长不需要氯化钠。16S rRNA基因序列相似性表明,菌株B9(T)与溶杆菌属(≤97.2%)、黄单胞菌属(≤96.8%)、假单胞菌属(≤96.7%)和藤黄单胞菌属(≤96.0%)相关。然而,在系统发育树中,该新菌株与堆肥藤黄单胞菌CC-YY255(T)物种(96.0%)共有一个分支点。DNA-DNA杂交实验表明,菌株B9(T)与恶臭藤黄单胞菌B1953/27.1(T)之间的DNA-DNA同源性为23.0%。模式菌株基因组DNA的G+C含量为64.7 mol%(标准差,1.1)。主要脂肪酸为异-C(11:0)、异-C(15:0)、异-C(16:0)、异-C(17:0)、异-C(17:0) ω9c和异-C(11:0) 3-OH。对16S rRNA基因序列、脂肪酸谱以及生理生化测试结果的综合分析表明,该分离株与其他藤黄单胞菌物种存在基因型和表型差异。基于这些原因,菌株B9(T)被提议为一个新物种,命名为河口藤黄单胞菌。该新物种的模式菌株为B9(T)(=KCTC 22048(T),DSM 19680(T))。

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