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组学时代之前:二维凝胶的早期岁月

The pre-omics era: the early days of two-dimensional gels.

作者信息

O'Farrell Patrick H

机构信息

Department of Biochemistry and Biophysics, UCSF, San Francisco, CA 94158-2517, USA.

出版信息

Proteomics. 2008 Dec;8(23-24):4842-52. doi: 10.1002/pmic.200800719.

Abstract

I present a personal view of the beginning of two-dimensional gels and unsanctioned proteomics. I was still a young graduate student in the early 1970s when I developed methods for two-dimensional gel electrophoresis that became widely used. Though the method gave us the capacity to do things that had never been done, the value of global enumeration of proteins was not appreciated, and we were still two decades away from the invention of the term proteomics. I describe a period of exploration where, by exercising our new capability, we conducted the first proteomic type expression experiments, and made unforeseen contributions to advances in biology. Detection of single-amino acid substitutions validated genetic selections in cultured cells, and revealed a regulatory system that maintains the accuracy of protein synthesis by assuring an unbiased supply of its substrates. We documented biologic control with a dynamic range >10(8) fold, and, in a surprising turn, we identified an approach that provided a major breakthrough in recombinant DNA technology, the ability to express cloned sequences in Escherichia coli. The challenge then and now is to use a capability for global analysis to produce new insights into fundamental aspects of biology and to drive substantive technical advances.

摘要

我将阐述个人对于二维凝胶电泳和非官方蛋白质组学起源的看法。20世纪70年代初,我还是一名年轻的研究生,当时我开发了二维凝胶电泳方法,并得到广泛应用。尽管该方法赋予了我们做前人未做之事的能力,但蛋白质全局计数的价值并未得到重视,而且距离蛋白质组学这一术语的发明还有二十年时间。我描述了一段探索时期,在此期间,我们运用新能力开展了首次蛋白质组学类型的表达实验,并为生物学进展做出了意想不到的贡献。单氨基酸取代的检测验证了培养细胞中的遗传筛选,并揭示了一种调控系统,该系统通过确保底物的无偏供应来维持蛋白质合成的准确性。我们记录了动态范围超过10的8次方倍的生物控制,而且令人惊讶的是,我们发现了一种在重组DNA技术上取得重大突破的方法,即能够在大肠杆菌中表达克隆序列。过去和现在面临的挑战都是利用全局分析能力,以获得对生物学基本方面的新见解,并推动实质性的技术进步。

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本文引用的文献

1
Two-Dimensional Gel Electrophoresis.二维凝胶电泳。
Science. 1962 Oct 12;138(3537):152-3. doi: 10.1126/science.138.3537.152.

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