Surkova Svetlana, Spirov Alexander V, Gursky Vitaly V, Janssens Hilde, Kim Ah-Ram, Radulescu Ovidiu, Vanario-Alonso Carlos E, Sharp David H, Samsonova Maria, Reinitz John
Department of Applied Mathematics and Statistics, and Center for Developmental Genetics, Stony Brook University, Stony Brook, New York, United States of America.
PLoS Comput Biol. 2009 Mar;5(3):e1000303. doi: 10.1371/journal.pcbi.1000303. Epub 2009 Mar 13.
The variation in the expression patterns of the gap genes in the blastoderm of the fruit fly Drosophila melanogaster reduces over time as a result of cross regulation between these genes, a fact that we have demonstrated in an accompanying article in PLoS Biology (see Manu et al., doi:10.1371/journal.pbio.1000049). This biologically essential process is an example of the phenomenon known as canalization. It has been suggested that the developmental trajectory of a wild-type organism is inherently stable, and that canalization is a manifestation of this property. Although the role of gap genes in the canalization process was established by correctly predicting the response of the system to particular perturbations, the stability of the developmental trajectory remains to be investigated. For many years, it has been speculated that stability against perturbations during development can be described by dynamical systems having attracting sets that drive reductions of volume in phase space. In this paper, we show that both the reduction in variability of gap gene expression as well as shifts in the position of posterior gap gene domains are the result of the actions of attractors in the gap gene dynamical system. Two biologically distinct dynamical regions exist in the early embryo, separated by a bifurcation at 53% egg length. In the anterior region, reduction in variation occurs because of stability induced by point attractors, while in the posterior, the stability of the developmental trajectory arises from a one-dimensional attracting manifold. This manifold also controls a previously characterized anterior shift of posterior region gap domains. Our analysis shows that the complex phenomena of canalization and pattern formation in the Drosophila blastoderm can be understood in terms of the qualitative features of the dynamical system. The result confirms the idea that attractors are important for developmental stability and shows a richer variety of dynamical attractors in developmental systems than has been previously recognized.
果蝇黑腹果蝇胚盘期间隙基因表达模式的变化会随着时间推移而减少,这是由于这些基因之间的交叉调控所致,我们已在《公共科学图书馆·生物学》的一篇相关文章中证明了这一点(见马努等人,doi:10.1371/journal.pbio.1000049)。这个生物学上至关重要的过程是被称为“稳态化”现象的一个例子。有人提出,野生型生物体的发育轨迹本质上是稳定的,而稳态化就是这种特性的一种表现。尽管间隙基因在稳态化过程中的作用是通过正确预测系统对特定扰动的反应而得以确立的,但发育轨迹的稳定性仍有待研究。多年来,人们一直推测,发育过程中对扰动的稳定性可以用具有吸引集的动力系统来描述,这些吸引集会导致相空间体积的减小。在本文中,我们表明间隙基因表达变异性的降低以及后部间隙基因结构域位置的移动都是间隙基因动力系统中吸引子作用的结果。早期胚胎中存在两个生物学上不同的动力区域,它们在卵长53%处由一个分岔分隔开。在前部区域,变异的减少是由于点吸引子诱导的稳定性,而在后部,发育轨迹的稳定性源于一维吸引流形。这个流形还控制着先前已被描述的后部区域间隙结构域的前部移动。我们的分析表明,果蝇胚盘期稳态化和模式形成的复杂现象可以根据动力系统的定性特征来理解。这一结果证实了吸引子对发育稳定性很重要的观点,并表明发育系统中的动力吸引子比之前所认识的更加多样。