SNP-o-matic.
SNP-o-matic.
机构信息
Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK.
出版信息
Bioinformatics. 2009 Sep 15;25(18):2434-5. doi: 10.1093/bioinformatics/btp403. Epub 2009 Jul 2.
Abstract
MOTIVATION
High throughput sequencing technologies generate large amounts of short reads. Mapping these to a reference sequence consumes large amounts of processing time and memory, and read mapping errors can lead to noisy or incorrect alignments. SNP-o-matic is a fast, memory-efficient and stringent read mapping tool offering a variety of analytical output functions, with an emphasis on genotyping.
AVAILABILITY
摘要
动机
高通量测序技术会产生大量的短读段。将这些短读段映射到参考序列上会消耗大量的处理时间和内存，并且读段映射错误会导致嘈杂或不正确的比对。SNP-o-matic 是一种快速、内存高效且严格的读段映射工具，提供了多种分析输出功能，重点是基因分型。
可用性
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