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代谢组学在后基因组时代对利什曼原虫研究的潜力。

The potential of metabolomics for Leishmania research in the post-genomics era.

机构信息

Groningen Bioinformatics Centre, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Kerklaan 30, 9751 NN Haren, The Netherlands.

出版信息

Parasitology. 2010 Aug;137(9):1291-302. doi: 10.1017/S0031182009992022. Epub 2010 Jan 29.

Abstract

The post-genomics era has provided researchers with access to a new generation of tools for the global characterization and understanding of pathogen diversity. This review provides a critical summary of published Leishmania post-genomic research efforts to date, and discusses the potential impact of the addition of metabolomics to the post-genomic toolbox. Metabolomics aims at understanding biology by comprehensive metabolite profiling. We present an overview of the design and interpretation of metabolomics experiments in the context of Leishmania research. Sample preparation, measurement techniques, and bioinformatics analysis of the generated complex datasets are discussed in detail. To illustrate the concepts and the expected results of metabolomics analyses, we also present an overview of comparative metabolic profiles of drug-sensitive and drug-resistant Leishmania donovani clinical isolates.

摘要

后基因组时代为研究人员提供了新一代的工具,用于全面描述和理解病原体的多样性。这篇综述批判性地总结了迄今为止已发表的利什曼原虫后基因组研究工作,并讨论了将代谢组学添加到后基因组工具包中的潜在影响。代谢组学旨在通过全面的代谢物分析来理解生物学。我们介绍了在利什曼原虫研究背景下设计和解释代谢组学实验的概述。详细讨论了样品制备、测量技术和生成的复杂数据集的生物信息学分析。为了说明代谢组学分析的概念和预期结果,我们还概述了对敏感和耐药利什曼原虫 Donovan 临床分离株的比较代谢谱。

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