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在饱和 ATP 浓度下,GroEL 的非平衡构象循环。

Out-of-equilibrium conformational cycling of GroEL under saturating ATP concentrations.

机构信息

Departments of Chemical Physics and Structural Biology, Weizmann Institute of Science, Rehovot 76100, Israel.

出版信息

Proc Natl Acad Sci U S A. 2010 Apr 6;107(14):6270-4. doi: 10.1073/pnas.0910246107. Epub 2010 Mar 22.

DOI:10.1073/pnas.0910246107
PMID:20308583
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2852005/
Abstract

The molecular chaperone GroEL exists in at least two allosteric states, T and R, that interconvert in an ATP-controlled manner. Thermodynamic analysis suggests that the T-state population becomes negligible with increasing ATP concentrations, in conflict with the requirement for conformational cycling, which is essential for the operation of molecular machines. To solve this conundrum, we performed fluorescence correlation spectroscopy on the single-ring version of GroEL, using a fluorescent switch recently built into its structure, which turns "on," i.e., increases its fluorescence dramatically, when ATP is added. A series of correlation functions was measured as a function of ATP concentration and analyzed using singular-value decomposition. The analysis assigned the signal to two states whose dynamics clearly differ. Surprisingly, even at ATP saturation, approximately 50% of the molecules still populate the T state at any instance of time, indicating constant out-of-equilibrium cycling between T and R. Only upon addition of the cochaperonin GroES does the T-state population vanish. Our results suggest a model in which the T/R ratio is controlled by the rate of ADP release after hydrolysis, which can be determined accordingly.

摘要

分子伴侣 GroEL 至少存在两种变构状态 T 和 R,可以通过 ATP 控制的方式相互转换。热力学分析表明,随着 ATP 浓度的增加,T 态群体变得可以忽略不计,这与构象循环的要求相矛盾,而构象循环对于分子机器的运作是必不可少的。为了解决这个难题,我们使用最近构建到其结构中的荧光开关,对 GroEL 的单环版本进行了荧光相关光谱分析,当添加 ATP 时,该荧光开关会“打开”,即荧光强度显著增加。我们测量了一系列与 ATP 浓度相关的相关函数,并使用奇异值分解进行了分析。分析将信号分配给两个动态明显不同的状态。令人惊讶的是,即使在 ATP 饱和的情况下,在任何时候仍有约 50%的分子仍处于 T 态,这表明 T 和 R 之间始终处于非平衡循环中。只有在添加共伴侣蛋白 GroES 后,T 态群体才会消失。我们的结果表明,T/R 比值由水解后 ADP 释放的速率控制,可以相应地确定。

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本文引用的文献

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Converging concepts of protein folding in vitro and in vivo.体外和体内蛋白质折叠的趋同概念。
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