• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

温度相关的大分子X射线晶体学

Temperature-dependent macromolecular X-ray crystallography.

作者信息

Weik Martin, Colletier Jacques Philippe

机构信息

CEA, IBS, Laboratoire de Biophysique Moléculaire, F-38054 Grenoble, France.

出版信息

Acta Crystallogr D Biol Crystallogr. 2010 Apr;66(Pt 4):437-46. doi: 10.1107/S0907444910002702. Epub 2010 Mar 24.

DOI:10.1107/S0907444910002702
PMID:20382997
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2852308/
Abstract

X-ray crystallography provides structural details of biological macromolecules. Whereas routine data are collected close to 100 K in order to mitigate radiation damage, more exotic temperature-controlled experiments in a broader temperature range from 15 K to room temperature can provide both dynamical and structural insights. Here, the dynamical behaviour of crystalline macromolecules and their surrounding solvent as a function of cryo-temperature is reviewed. Experimental strategies of kinetic crystallography are discussed that have allowed the generation and trapping of macromolecular intermediate states by combining reaction initiation in the crystalline state with appropriate temperature profiles. A particular focus is on recruiting X-ray-induced changes for reaction initiation, thus unveiling useful aspects of radiation damage, which otherwise has to be minimized in macromolecular crystallography.

摘要

X射线晶体学可提供生物大分子的结构细节。常规数据采集通常在接近100 K的温度下进行,以减轻辐射损伤,而在从15 K到室温的更宽温度范围内进行的更特殊的温控实验,能够提供动力学和结构方面的见解。本文综述了晶体大分子及其周围溶剂在低温下的动力学行为。讨论了动力学晶体学的实验策略,这些策略通过将晶体状态下的反应引发与适当的温度分布相结合,实现了大分子中间态的生成与捕获。特别关注利用X射线诱导的变化来引发反应,从而揭示辐射损伤的有用方面,而在大分子晶体学中,辐射损伤通常需要被降至最低。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2cdb/2852308/2c7fc2607011/d-66-00437-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2cdb/2852308/063b3bff43b1/d-66-00437-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2cdb/2852308/de2da152588a/d-66-00437-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2cdb/2852308/2c7fc2607011/d-66-00437-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2cdb/2852308/063b3bff43b1/d-66-00437-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2cdb/2852308/de2da152588a/d-66-00437-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2cdb/2852308/2c7fc2607011/d-66-00437-fig3.jpg

相似文献

1
Temperature-dependent macromolecular X-ray crystallography.温度相关的大分子X射线晶体学
Acta Crystallogr D Biol Crystallogr. 2010 Apr;66(Pt 4):437-46. doi: 10.1107/S0907444910002702. Epub 2010 Mar 24.
2
Identifying and avoiding radiation damage in macromolecular crystallography.在大分子晶体学中识别并避免辐射损伤
Acta Crystallogr D Struct Biol. 2024 May 1;80(Pt 5):314-327. doi: 10.1107/S2059798324003243. Epub 2024 Apr 30.
3
Shoot-and-Trap: use of specific x-ray damage to study structural protein dynamics by temperature-controlled cryo-crystallography.射击与捕获:利用特定的X射线损伤通过温控低温晶体学研究结构蛋白动力学。
Proc Natl Acad Sci U S A. 2008 Aug 19;105(33):11742-7. doi: 10.1073/pnas.0804828105. Epub 2008 Aug 13.
4
Softer and soft X-rays in macromolecular crystallography.大分子晶体学中的软X射线和极软X射线
J Synchrotron Radiat. 2005 Jul;12(Pt 4):410-9. doi: 10.1107/S0909049504025762. Epub 2005 Jun 15.
5
Uniqueness of the macromolecular crystallographic phase problem.大分子晶体学相位问题的独特性。
Acta Crystallogr A Found Adv. 2015 Nov;71(Pt 6):592-8. doi: 10.1107/S2053273315015387. Epub 2015 Oct 6.
6
The kinetic dose limit in room-temperature time-resolved macromolecular crystallography.室温时间分辨大分子晶体学中的动力学剂量限制。
J Synchrotron Radiat. 2012 Mar;19(Pt 2):264-73. doi: 10.1107/S090904951105549X. Epub 2012 Jan 18.
7
Combining temperature perturbations with X-ray crystallography to study dynamic macromolecules: A thorough discussion of experimental methods.结合温度扰动与 X 射线晶体学研究动态大分子:实验方法的全面讨论。
Methods Enzymol. 2023;688:255-305. doi: 10.1016/bs.mie.2023.07.008. Epub 2023 Aug 12.
8
Progress in rational methods of cryoprotection in macromolecular crystallography.大分子晶体学中合理冷冻保护方法的进展。
Acta Crystallogr D Biol Crystallogr. 2010 Apr;66(Pt 4):366-73. doi: 10.1107/S090744490903995X. Epub 2010 Mar 24.
9
Radiation damage in macromolecular crystallography: what is it and why should we care?大分子晶体学中的辐射损伤:它是什么以及我们为何要关注?
Acta Crystallogr D Biol Crystallogr. 2010 Apr;66(Pt 4):339-51. doi: 10.1107/S0907444910008656. Epub 2010 Mar 24.
10
X-ray radiation damage to biological macromolecules: further insights.X射线对生物大分子的辐射损伤:进一步的见解
J Synchrotron Radiat. 2017 Jan 1;24(Pt 1):1-6. doi: 10.1107/S160057751602018X.

引用本文的文献

1
Exploring the dynamics of allostery through multi-dimensional crystallography.通过多维晶体学探索变构动力学。
Biophys Rev. 2024 Sep 19;16(5):563-570. doi: 10.1007/s12551-024-01224-3. eCollection 2024 Oct.
2
Cryo2RT: a high-throughput method for room-temperature macromolecular crystallography from cryo-cooled crystals.Cryo2RT:一种从 cryo-cooled 晶体进行室温下大分子晶体学的高通量方法。
Acta Crystallogr D Struct Biol. 2024 Aug 1;80(Pt 8):620-628. doi: 10.1107/S2059798324006697. Epub 2024 Jul 25.
3
Doses for X-ray and electron diffraction: New features in RADDOSE-3D including intensity decay models.

本文引用的文献

1
Hyperquenching for protein cryocrystallography.用于蛋白质低温晶体学的超猝灭
J Appl Crystallogr. 2006 Dec 1;39(6):805-811. doi: 10.1107/S0021889806037484.
2
Progress in rational methods of cryoprotection in macromolecular crystallography.大分子晶体学中合理冷冻保护方法的进展。
Acta Crystallogr D Biol Crystallogr. 2010 Apr;66(Pt 4):366-73. doi: 10.1107/S090744490903995X. Epub 2010 Mar 24.
3
Origin and temperature dependence of radiation damage in biological samples at cryogenic temperatures.生物样品在低温下辐射损伤的起源和温度依赖性。
X 射线和电子衍射剂量:RADDOSE-3D 中的新功能,包括强度衰减模型。
Protein Sci. 2024 Jul;33(7):e5005. doi: 10.1002/pro.5005.
4
Temperature as a modulator of allosteric motions and crosstalk in mesophilic and thermophilic enzymes.温度作为中温酶和嗜热酶变构运动及串扰的调节剂。
Front Mol Biosci. 2023 Oct 9;10:1281062. doi: 10.3389/fmolb.2023.1281062. eCollection 2023.
5
Refinement of multiconformer ensemble models from multi-temperature X-ray diffraction data.从多温度 X 射线衍射数据中精炼多构象集合模型。
Methods Enzymol. 2023;688:223-254. doi: 10.1016/bs.mie.2023.06.009. Epub 2023 Jul 27.
6
Complementarity of neutron, XFEL and synchrotron crystallography for defining the structures of metalloenzymes at room temperature.中子、X射线自由电子激光和同步辐射晶体学在室温下确定金属酶结构方面的互补性。
IUCrJ. 2022 Jul 25;9(Pt 5):610-624. doi: 10.1107/S2052252522006418. eCollection 2022 Sep 1.
7
Probing ligand binding of endothiapepsin by `temperature-resolved' macromolecular crystallography.通过“温度分辨”的大分子晶体学探测内肽酶的配体结合。
Acta Crystallogr D Struct Biol. 2022 Aug 1;78(Pt 8):964-974. doi: 10.1107/S205979832200612X. Epub 2022 Jul 27.
8
Temperature artifacts in protein structures bias ligand-binding predictions.蛋白质结构中的温度伪影会使配体结合预测产生偏差。
Chem Sci. 2021 Jul 13;12(34):11275-11293. doi: 10.1039/d1sc02751d. eCollection 2021 Sep 1.
9
Multimodal Non-Contact Luminescence Thermometry with Cr-Doped Oxides.基于Cr掺杂氧化物的多模态非接触发光测温法。
Sensors (Basel). 2020 Sep 15;20(18):5259. doi: 10.3390/s20185259.
10
Dynamics of Ionic Interactions at Protein-Nucleic Acid Interfaces.蛋白质-核酸界面处离子相互作用的动力学。
Acc Chem Res. 2020 Sep 15;53(9):1802-1810. doi: 10.1021/acs.accounts.0c00212. Epub 2020 Aug 26.
Proc Natl Acad Sci U S A. 2010 Jan 19;107(3):1094-9. doi: 10.1073/pnas.0905481107. Epub 2009 Dec 28.
4
Slow cooling of protein crystals.蛋白质晶体的缓慢冷却。
J Appl Crystallogr. 2009 Oct 1;42(Pt 5):944-952. doi: 10.1107/S0021889809023553. Epub 2009 Aug 1.
5
Structural snapshots of conformational changes in a seven-helix membrane protein: lessons from bacteriorhodopsin.七螺旋膜蛋白构象变化的结构快照:来自细菌视紫红质的经验教训。
Curr Opin Struct Biol. 2009 Aug;19(4):433-9. doi: 10.1016/j.sbi.2009.07.009. Epub 2009 Jul 28.
6
The protein-solvent glass transition.蛋白质-溶剂玻璃化转变
Biochim Biophys Acta. 2010 Jan;1804(1):3-14. doi: 10.1016/j.bbapap.2009.06.019. Epub 2009 Jul 3.
7
Protein dynamics of a beta-sheet protein.一种β-折叠蛋白的蛋白质动力学
Eur Biophys J. 2009 Jun;38(5):687-700. doi: 10.1007/s00249-009-0427-z. Epub 2009 Mar 7.
8
Evidence for liquid water during the high-density to low-density amorphous ice transition.在高密度到低密度非晶冰转变过程中存在液态水的证据。
Proc Natl Acad Sci U S A. 2009 Mar 24;106(12):4596-600. doi: 10.1073/pnas.0812481106. Epub 2009 Mar 3.
9
Simultaneous measurements of solvent dynamics and functional kinetics in a light-activated enzyme.光激活酶中溶剂动力学和功能动力学的同步测量。
Biophys J. 2009 Mar 4;96(5):1902-10. doi: 10.1016/j.bpj.2008.10.065.
10
A unified model of protein dynamics.蛋白质动力学的统一模型。
Proc Natl Acad Sci U S A. 2009 Mar 31;106(13):5129-34. doi: 10.1073/pnas.0900336106. Epub 2009 Feb 27.