• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

室温时间分辨大分子晶体学中的动力学剂量限制。

The kinetic dose limit in room-temperature time-resolved macromolecular crystallography.

机构信息

Department of Physics, University of Wisconsin-Milwaukee, Milwaukee, WI 53211, USA.

出版信息

J Synchrotron Radiat. 2012 Mar;19(Pt 2):264-73. doi: 10.1107/S090904951105549X. Epub 2012 Jan 18.

DOI:10.1107/S090904951105549X
PMID:22338689
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3284346/
Abstract

Protein X-ray structures are determined with ionizing radiation that damages the protein at high X-ray doses. As a result, diffraction patterns deteriorate with the increased absorbed dose. Several strategies such as sample freezing or scavenging of X-ray-generated free radicals are currently employed to minimize this damage. However, little is known about how the absorbed X-ray dose affects time-resolved Laue data collected at physiological temperatures where the protein is fully functional in the crystal, and how the kinetic analysis of such data depends on the absorbed dose. Here, direct evidence for the impact of radiation damage on the function of a protein is presented using time-resolved macromolecular crystallography. The effect of radiation damage on the kinetic analysis of time-resolved X-ray data is also explored.

摘要

蛋白质的 X 射线结构是用电离辐射来确定的,这种辐射会在高 X 射线剂量下损伤蛋白质。因此,随着吸收剂量的增加,衍射图案会恶化。目前,人们采用了几种策略,如样品冷冻或清除 X 射线产生的自由基,以尽量减少这种损伤。然而,对于吸收的 X 射线剂量如何影响在生理温度下收集的时间分辨劳埃数据,以及这种数据的动力学分析如何依赖于吸收剂量,人们知之甚少。在这里,使用时间分辨大分子晶体学直接证明了辐射损伤对蛋白质功能的影响。还探讨了辐射损伤对时间分辨 X 射线数据的动力学分析的影响。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75d5/3284346/97f65e633878/s-19-00264-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75d5/3284346/71be13d82b73/s-19-00264-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75d5/3284346/415c7a06ca2c/s-19-00264-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75d5/3284346/3ab10df94f5c/s-19-00264-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75d5/3284346/f0ab0428a13e/s-19-00264-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75d5/3284346/fd6982b82c1b/s-19-00264-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75d5/3284346/97f65e633878/s-19-00264-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75d5/3284346/71be13d82b73/s-19-00264-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75d5/3284346/415c7a06ca2c/s-19-00264-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75d5/3284346/3ab10df94f5c/s-19-00264-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75d5/3284346/f0ab0428a13e/s-19-00264-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75d5/3284346/fd6982b82c1b/s-19-00264-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75d5/3284346/97f65e633878/s-19-00264-fig6.jpg

相似文献

1
The kinetic dose limit in room-temperature time-resolved macromolecular crystallography.室温时间分辨大分子晶体学中的动力学剂量限制。
J Synchrotron Radiat. 2012 Mar;19(Pt 2):264-73. doi: 10.1107/S090904951105549X. Epub 2012 Jan 18.
2
The frontiers of time-resolved macromolecular crystallography: movies and chirped X-ray pulses.时间分辨大分子晶体学前沿:电影与啁啾X射线脉冲
Faraday Discuss. 2003;122:65-77; discussion 79-88. doi: 10.1039/b201620f.
3
Parameters affecting the X-ray dose absorbed by macromolecular crystals.影响大分子晶体吸收X射线剂量的参数。
J Synchrotron Radiat. 2005 May;12(Pt 3):268-75. doi: 10.1107/S0909049505003262. Epub 2005 Apr 14.
4
Towards time-resolved serial crystallography in a microfluidic device.迈向微流控装置中的时间分辨串行晶体学。
Acta Crystallogr F Struct Biol Commun. 2015 Jul;71(Pt 7):823-30. doi: 10.1107/S2053230X15009061. Epub 2015 Jun 27.
5
Protein energy landscapes determined by five-dimensional crystallography.通过五维晶体学确定的蛋白质能量景观。
Acta Crystallogr D Biol Crystallogr. 2013 Dec;69(Pt 12):2534-42. doi: 10.1107/S0907444913025997. Epub 2013 Nov 19.
6
'Cool' crystals: macromolecular cryocrystallography and radiation damage.“低温”晶体:大分子低温晶体学与辐射损伤
Curr Opin Struct Biol. 2003 Oct;13(5):545-51. doi: 10.1016/j.sbi.2003.09.013.
7
Generalized X-ray and neutron crystallographic analysis: more accurate and complete structures for biological macromolecules.广义X射线和中子晶体学分析:用于生物大分子的更精确和完整的结构
Acta Crystallogr D Biol Crystallogr. 2009 Jun;65(Pt 6):567-73. doi: 10.1107/S0907444909011548. Epub 2009 May 15.
8
Femtosecond structural dynamics drives the trans/cis isomerization in photoactive yellow protein.飞秒结构动力学驱动光敏黄色蛋白中的反式/顺式异构化。
Science. 2016 May 6;352(6286):725-9. doi: 10.1126/science.aad5081. Epub 2016 May 5.
9
Cryocooling and radiation damage in macromolecular crystallography.大分子晶体学中的低温冷却与辐射损伤
Acta Crystallogr D Biol Crystallogr. 2006 Jan;62(Pt 1):32-47. doi: 10.1107/S0907444905034207. Epub 2005 Dec 14.
10
Temperature-dependent macromolecular X-ray crystallography.温度相关的大分子X射线晶体学
Acta Crystallogr D Biol Crystallogr. 2010 Apr;66(Pt 4):437-46. doi: 10.1107/S0907444910002702. Epub 2010 Mar 24.

引用本文的文献

1
Data of radiation damage on selenomethionine-substituted single-domain substrate-binding protein.硒代蛋氨酸取代的单结构域底物结合蛋白的辐射损伤数据。
Data Brief. 2024 Jan 30;53:110114. doi: 10.1016/j.dib.2024.110114. eCollection 2024 Apr.
2
Biological function investigated by time-resolved structure determination.通过时间分辨结构测定研究生物功能。
Struct Dyn. 2023 Feb 21;10(1):010901. doi: 10.1063/4.0000177. eCollection 2023 Jan.
3
Time-Resolved Macromolecular Crystallography at Pulsed X-ray Sources.脉冲 X 射线源的时间分辨大分子晶体学。

本文引用的文献

1
Laue crystal structure of Shewanella oneidensis cytochrome c nitrite reductase from a high-yield expression system.希瓦氏菌细胞色素 c 亚硝酸盐还原酶的劳埃晶体结构来自高产表达系统。
J Biol Inorg Chem. 2012 Apr;17(4):647-62. doi: 10.1007/s00775-012-0885-0. Epub 2012 Mar 2.
2
pH dependence of the photoactive yellow protein photocycle investigated by time-resolved crystallography.通过时间分辨晶体学研究光致变色黄色蛋白光循环的 pH 依赖性。
Biophys J. 2012 Jan 18;102(2):325-32. doi: 10.1016/j.bpj.2011.11.4021.
3
Can radiation damage to protein crystals be reduced using small-molecule compounds?
Int J Mol Sci. 2019 Mar 20;20(6):1401. doi: 10.3390/ijms20061401.
4
A short history of structure based research on the photocycle of photoactive yellow protein.基于光活性黄色蛋白光循环的结构研究简史
Struct Dyn. 2017 Jan 31;4(3):032201. doi: 10.1063/1.4974172. eCollection 2017 May.
5
Room temperature structures beyond 1.5 Å by serial femtosecond crystallography.利用连续飞秒晶体学获得超过 1.5Å 的室温结构。
Struct Dyn. 2015 May 7;2(4):041708. doi: 10.1063/1.4919903. eCollection 2015 Jul.
6
Towards time-resolved serial crystallography in a microfluidic device.迈向微流控装置中的时间分辨串行晶体学。
Acta Crystallogr F Struct Biol Commun. 2015 Jul;71(Pt 7):823-30. doi: 10.1107/S2053230X15009061. Epub 2015 Jun 27.
7
Time-resolved serial crystallography captures high-resolution intermediates of photoactive yellow protein.时分辨连续晶体学捕获光致变色黄色蛋白的高分辨率中间体。
Science. 2014 Dec 5;346(6214):1242-6. doi: 10.1126/science.1259357.
8
Microcrystallization techniques for serial femtosecond crystallography using photosystem II from Thermosynechococcus elongatus as a model system.以嗜热栖热放线菌的光系统II为模型系统进行串行飞秒晶体学的微晶化技术。
Philos Trans R Soc Lond B Biol Sci. 2014 Jul 17;369(1647):20130316. doi: 10.1098/rstb.2013.0316.
9
Protein energy landscapes determined by five-dimensional crystallography.通过五维晶体学确定的蛋白质能量景观。
Acta Crystallogr D Biol Crystallogr. 2013 Dec;69(Pt 12):2534-42. doi: 10.1107/S0907444913025997. Epub 2013 Nov 19.
10
Kinetic modeling of the X-ray-induced damage to a metalloprotein.金属蛋白酶的 X 射线损伤动力学建模。
J Phys Chem B. 2013 Aug 8;117(31):9161-9. doi: 10.1021/jp403654n. Epub 2013 Jul 25.
使用小分子化合物能否减少辐射对蛋白质晶体的损伤?
Acta Crystallogr D Biol Crystallogr. 2011 Oct;67(Pt 10):881-93. doi: 10.1107/S0907444911032835. Epub 2011 Sep 8.
4
BioCARS: a synchrotron resource for time-resolved X-ray science.生物同步辐射环(BioCARS):用于时间分辨 X 射线科学的同步加速器资源。
J Synchrotron Radiat. 2011 Jul;18(Pt 4):658-70. doi: 10.1107/S0909049511009423. Epub 2011 May 12.
5
The short-lived signaling state of the photoactive yellow protein photoreceptor revealed by combined structural probes.结合结构探针揭示的光激活黄色蛋白光受体的短暂信号状态。
J Am Chem Soc. 2011 Jun 22;133(24):9395-404. doi: 10.1021/ja200617t. Epub 2011 May 31.
6
Radiation damage in room-temperature data acquisition with the PILATUS 6M pixel detector.PILATUS 6M 像素探测器在室温数据采集下的辐射损伤。
J Synchrotron Radiat. 2011 May;18(Pt 3):318-28. doi: 10.1107/S090904951100968X. Epub 2011 Apr 9.
7
Macromolecular crystallography radiation damage research: what's new?大分子晶体学辐射损伤研究:有哪些新进展?
J Synchrotron Radiat. 2011 May;18(Pt 3):313-7. doi: 10.1107/S0909049511013859. Epub 2011 Apr 27.
8
Interaction of nitric oxide with catalase: structural and kinetic analysis.一氧化氮与过氧化氢酶的相互作用:结构与动力学分析。
Biochemistry. 2011 May 31;50(21):4491-503. doi: 10.1021/bi200130r. Epub 2011 May 6.
9
Five-dimensional crystallography.五维晶体学。
Acta Crystallogr A. 2010 Mar;66(Pt 2):198-206. doi: 10.1107/S0108767309054166. Epub 2010 Feb 18.
10
Origin and temperature dependence of radiation damage in biological samples at cryogenic temperatures.生物样品在低温下辐射损伤的起源和温度依赖性。
Proc Natl Acad Sci U S A. 2010 Jan 19;107(3):1094-9. doi: 10.1073/pnas.0905481107. Epub 2009 Dec 28.