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在酮固醇异构酶活性位点中沿着反应坐标的溶剂化响应。

Solvation response along the reaction coordinate in the active site of ketosteroid isomerase.

机构信息

Department of Chemistry, Stanford University, Stanford, California 94305-5080, USA.

出版信息

J Am Chem Soc. 2010 May 12;132(18):6474-80. doi: 10.1021/ja1007849.

DOI:10.1021/ja1007849
PMID:20397697
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2871671/
Abstract

A light-activated reaction analog has been developed to mimic the catalytic reaction cycle of Delta(5)-3-ketosteroid isomerase to probe the functionally relevant protein solvation response to the catalytic charge transfer. Delta(5)-3-ketosteroid isomerase from Pseudomonas putida catalyzes a C-H bond cleavage and formation through an enolate intermediate. Conversion of the ketone substrate to the enolate intermediate is simulated by a photoacid bound to the active site oxyanion hole. In the ground state, the photoacid electrostatically resembles the enolate intermediate while the low pK(a) excited state resembles the ketone starting material. Time-resolved fluorescence experiments with photoacids coumarin 183 and equilenin show the active site of Delta(5)-3-ketosteroid isomerase to be largely unperturbed by the light-activated reaction. The small solvation response for the photoacid at the active site as compared with a simple solvent suggests the active site does not significantly change its electrostatic environment during the catalytic cycle. Instead, the reaction takes place in an electrostatically preorganized environment.

摘要

已开发出一种光激活反应类似物,以模拟 Delta(5)-3-酮固醇异构酶的催化反应循环,从而探究与功能相关的蛋白质溶剂化对催化电荷转移的响应。假单胞菌属中的 Delta(5)-3-酮固醇异构酶通过烯醇化物中间体催化 C-H 键的断裂和形成。酮底物向烯醇化物中间体的转化通过与活性位点氧阴离子穴结合的光酸模拟。在基态下,光酸在静电上类似于烯醇化物中间体,而低 pK(a)激发态类似于酮起始物质。用光酸香豆素 183 和 Equilenin 进行的时间分辨荧光实验表明,Delta(5)-3-酮固醇异构酶的活性位点受光激活反应的影响很小。与简单溶剂相比,光酸在活性位点的小溶剂化响应表明,在催化循环过程中,活性位点的静电环境不会发生显著变化。相反,反应发生在静电预组织的环境中。

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本文引用的文献

1
Quantitative, directional measurement of electric field heterogeneity in the active site of ketosteroid isomerase.定量、定向测量酮固醇异构酶活性部位的电场异质性。
Proc Natl Acad Sci U S A. 2012 Feb 7;109(6):E299-308. doi: 10.1073/pnas.1111566109. Epub 2012 Jan 17.
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Proton affinity of the oxyanion hole in the active site of ketosteroid isomerase.酮甾体异构酶活性部位中氧阴离子穴的质子亲和力。
Biochemistry. 2010 Mar 30;49(12):2725-31. doi: 10.1021/bi100074s.
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Hybrid quantum/classical molecular dynamics simulations of the proton transfer reactions catalyzed by ketosteroid isomerase: analysis of hydrogen bonding, conformational motions, and electrostatics.酮甾类异构酶催化的质子转移反应的量子/经典混合分子动力学模拟:氢键、构象运动和静电分析
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Do ligand binding and solvent exclusion alter the electrostatic character within the oxyanion hole of an enzymatic active site?配体结合和溶剂排除会改变酶活性位点氧负离子洞内部的静电特性吗?
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