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生物目录:生命科学领域的通用网络服务目录。

BioCatalogue: a universal catalogue of web services for the life sciences.

机构信息

School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK.

出版信息

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W689-94. doi: 10.1093/nar/gkq394. Epub 2010 May 19.

Abstract

The use of Web Services to enable programmatic access to on-line bioinformatics is becoming increasingly important in the Life Sciences. However, their number, distribution and the variable quality of their documentation can make their discovery and subsequent use difficult. A Web Services registry with information on available services will help to bring together service providers and their users. The BioCatalogue (http://www.biocatalogue.org/) provides a common interface for registering, browsing and annotating Web Services to the Life Science community. Services in the BioCatalogue can be described and searched in multiple ways based upon their technical types, bioinformatics categories, user tags, service providers or data inputs and outputs. They are also subject to constant monitoring, allowing the identification of service problems and changes and the filtering-out of unavailable or unreliable resources. The system is accessible via a human-readable 'Web 2.0'-style interface and a programmatic Web Service interface. The BioCatalogue follows a community approach in which all services can be registered, browsed and incrementally documented with annotations by any member of the scientific community.

摘要

在生命科学领域,使用 Web 服务来实现对在线生物信息学的编程访问变得越来越重要。然而,它们的数量、分布以及文档质量的参差不齐使得发现和后续使用变得困难。一个包含可用服务信息的 Web 服务注册中心将有助于将服务提供商及其用户聚集在一起。BioCatalogue(http://www.biocatalogue.org/)为生命科学界提供了一个用于注册、浏览和注释 Web 服务的通用接口。BioCatalogue 中的服务可以根据其技术类型、生物信息学类别、用户标签、服务提供商或数据输入和输出以多种方式进行描述和搜索。它们还受到持续监控,允许识别服务问题和更改,并过滤掉不可用或不可靠的资源。该系统可通过人类可读的“Web 2.0”风格的界面和编程 Web 服务接口进行访问。BioCatalogue 采用社区方法,任何科学界成员都可以注册、浏览和使用注释来逐步记录所有服务。

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