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定向进化 DNA 聚合酶用于下一代测序。

Directed evolution of DNA polymerases for next-generation sequencing.

机构信息

Department of Chemistry, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA.

出版信息

Angew Chem Int Ed Engl. 2010 Aug 9;49(34):5921-4. doi: 10.1002/anie.201001607.

DOI:10.1002/anie.201001607
PMID:20629059
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3043640/
Abstract

[Image: see text] We present the application of an activity-based phage display method to identify DNA polymerases tailored for next generation sequencing applications. Using this approach, we identify a mutant of Taq DNA polymerase that incorporates the fluorophore-labeled dA, dT, dC, and dG substrates ~50 to 400-fold more efficiently into scarred primers in solution and that also demonstrates significantly improved performance under actual sequencing conditions.

摘要

[图片:见正文]我们展示了一种基于活性的噬菌体展示方法在鉴定为下一代测序应用定制的 DNA 聚合酶方面的应用。通过这种方法,我们鉴定出了一种 Taq DNA 聚合酶的突变体,它能将标记有荧光基团的 dA、dT、dC 和 dG 底物在溶液中更有效地掺入有缺口的引物中,效率提高了 50 到 400 倍,并且在实际测序条件下也表现出了显著改善的性能。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c2d/3043640/9fbeb188c822/nihms242274f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c2d/3043640/2a3370b1581b/nihms242274f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c2d/3043640/f3d9d04a0954/nihms242274f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c2d/3043640/9fbeb188c822/nihms242274f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c2d/3043640/2a3370b1581b/nihms242274f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c2d/3043640/f3d9d04a0954/nihms242274f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c2d/3043640/9fbeb188c822/nihms242274f3.jpg

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Proc Natl Acad Sci U S A. 2010 Feb 2;107(5):1948-53. doi: 10.1073/pnas.0908463107. Epub 2010 Jan 11.
2
Evolving a polymerase for hydrophobic base analogues.为疏水性碱基类似物进化聚合酶。
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Virtual terminator nucleotides for next-generation DNA sequencing.用于下一代DNA测序的虚拟终止子核苷酸
Nat Methods. 2009 Aug;6(8):593-5. doi: 10.1038/nmeth.1354. Epub 2009 Jul 20.
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Taking fingerprints of DNA polymerases: multiplex enzyme profiling on DNA arrays.获取DNA聚合酶的指纹图谱:DNA阵列上的多重酶分析
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Novel strategies for the site-specific covalent labelling of nucleic acids.核酸位点特异性共价标记的新策略。
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Accurate whole human genome sequencing using reversible terminator chemistry.使用可逆终止子化学法进行准确的全人类基因组测序。
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