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氮氧卟啉的电子结构和动力学。

Electronic structure and dynamics of nitrosyl porphyrins.

机构信息

Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556, USA.

出版信息

Inorg Chem. 2010 Jul 19;49(14):6240-52. doi: 10.1021/ic100261b.

DOI:10.1021/ic100261b
PMID:20666384
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2919577/
Abstract

Nitric oxide (NO) is a signaling molecule employed to regulate essential physiological processes. Thus, there is great interest in understanding the interaction of NO with heme, which is found at the active site of many proteins that recognize NO, as well as those involved in its creation and elimination. We summarize what we have learned from investigations of the structure, vibrational properties, and conformational dynamics of NO complexes with ferrous porphyrins, as well as computational investigations in support of these experimental studies. Multitemperature crystallographic data reveal variations in the orientational disorder of the nitrosyl ligand. In some cases, equilibria among NO orientations can be analyzed using the van't Hoff relationship and the free energy and enthalpy of the solid-state transitions evaluated experimentally. Density functional theory (DFT) calculations predict that intrinsic barriers to torsional rotation are smaller than thermal energies at physiological temperatures, and the coincidence of observed NO orientations with minima in molecular mechanics potentials indicates that nonbonded interactions with other chemical groups control the conformational freedom of the bound NO. In favorable cases, reduced disorder at low temperatures exposes subtle structural features including off-axis tilting of the Fe-NO bond and anisotropy of the equatorial Fe-N bonds. We also present the results of nuclear resonance vibrational spectroscopy measurements on oriented single crystals of [Fe(TPP)(NO)] and [Fe(TPP)(1-MeIm)(NO)]. These describe the anisotropic vibrational motion of iron in five- and six-coordinate heme-NO complexes and reveal vibrations of all Fe-ligand bonds as well as low-frequency molecular distortions associated with the doming of the heme upon ligand binding. A quantitative comparison with predicted frequencies, amplitudes, and directions facilitates identification of the vibrational modes but also suggests that commonly used DFT functionals are not fully successful at capturing the trans interaction between the axial NO and imidazole ligands. This supports previous conclusions that heme-NO complexes exhibit an unusual degree of variability with respect to the computational method, and we speculate that this variability hints at a genuine electronic instability that a protein can exploit to tune its reactivity. We anticipate that ongoing characterization of heme-NO complexes will deepen our understanding of their structure, dynamics, and reactivity.

摘要

一氧化氮 (NO) 是一种信号分子,用于调节重要的生理过程。因此,人们非常感兴趣的是了解 NO 与血红素的相互作用,血红素存在于许多识别 NO 的蛋白质的活性部位,以及那些参与其生成和消除的蛋白质。我们总结了从对亚铁卟啉与亚硝酰配合物的结构、振动性质和构象动力学的研究,以及对这些实验研究的支持的计算研究中所学到的知识。多温度晶体学数据揭示了硝酰配体的取向无序性的变化。在某些情况下,可以使用范特霍夫关系分析 NO 取向之间的平衡,并且可以实验评估固态转变的自由能和焓。密度泛函理论 (DFT) 计算预测,扭转旋转的内在势垒在生理温度下小于热能,并且观察到的 NO 取向与分子力学势中的最小值重合表明,与其他化学基团的非键相互作用控制了结合态 NO 的构象自由度。在有利的情况下,低温下降低的无序性暴露了微妙的结构特征,包括 Fe-NO 键的偏离轴倾斜和赤道 Fe-N 键的各向异性。我们还介绍了对[Fe(TPP)(NO)]和[Fe(TPP)(1-MeIm)(NO)]的取向单晶进行核共振振动光谱测量的结果。这些描述了五配位和六配位血红素-NO 配合物中铁的各向异性振动,并揭示了所有 Fe-配体键的振动以及与配体结合时血红素的凸起相关的低频分子变形。与预测频率、幅度和方向的定量比较有助于识别振动模式,但也表明常用的 DFT 泛函在捕捉轴向 NO 和咪唑配体之间的反相互作用方面并不完全成功。这支持了先前的结论,即血红素-NO 配合物在计算方法方面表现出异常程度的可变性,并且我们推测这种可变性暗示了一种真正的电子不稳定性,蛋白质可以利用这种不稳定性来调节其反应性。我们预计对血红素-NO 配合物的持续表征将加深我们对其结构、动力学和反应性的理解。

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