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本文引用的文献

1
Chlorido(2,3,7,8,12,13,17,18-octa-ethyl-porphyrinato)iron(III) dichloro-methane sesquisolvate.二氯甲烷倍半溶剂合物氯代(2,3,7,8,12,13,17,18-八乙基-卟啉)铁(III)
Acta Crystallogr Sect E Struct Rep Online. 2010 Jun 5;66(Pt 7):m733. doi: 10.1107/S1600536810020015.
2
Electronic structure and dynamics of nitrosyl porphyrins.氮氧卟啉的电子结构和动力学。
Inorg Chem. 2010 Jul 19;49(14):6240-52. doi: 10.1021/ic100261b.
3
Coupling of collective motions of the protein matrix to vibrations of the non-heme iron in bacterial photosynthetic reaction centers.细菌光合反应中心中蛋白质基质的集体运动与非血红素铁振动的耦合。
Biochim Biophys Acta. 2010 Oct;1797(10):1696-704. doi: 10.1016/j.bbabio.2010.06.012. Epub 2010 Jul 11.
4
Oriented single-crystal nuclear resonance vibrational spectroscopy of [Fe(TPP)(MI)(NO)]: quantitative assessment of the trans effect of NO.[Fe(TPP)(MI)(NO)]的各向同性单晶核共振振动光谱:NO 反式效应的定量评估。
Inorg Chem. 2010 Aug 2;49(15):7197-215. doi: 10.1021/ic1010677.
5
Identification of protein-bound dinitrosyl iron complexes by nuclear resonance vibrational spectroscopy.核共振振动光谱法鉴定蛋白质结合的亚硝酰铁复合物。
J Am Chem Soc. 2010 May 26;132(20):6914-6. doi: 10.1021/ja101002f.
6
Probing vibrational anisotropy with nuclear resonance vibrational spectroscopy.利用核共振振动光谱探测振动各向异性
Angew Chem Int Ed Engl. 2010 Jun 14;49(26):4400-4. doi: 10.1002/anie.201000928.
7
Resonant Cavity Imaging: A Means Toward High-Throughput Label-Free Protein Detection.共振腔成像:一种实现高通量无标记蛋白质检测的方法。
IEEE J Sel Top Quantum Electron. 2008;14(1):131-139. doi: 10.1109/JSTQE.2007.913397.
8
Direct evidence for mode-specific vibrational energy relaxation from quantum time-dependent perturbation theory. II. The nu(4) and nu(7) modes of iron-protoporphyrin IX and iron porphine.基于量子含时微扰理论的特定模式振动能量弛豫的直接证据。II. 铁原卟啉IX和铁卟啉的ν(4)和ν(7)模式
J Chem Phys. 2009 Mar 7;130(9):095102. doi: 10.1063/1.3086080.
9
Probing the electronic structure of the hemoglobin active center in physiological solutions.探究生理溶液中血红蛋白活性中心的电子结构。
Phys Rev Lett. 2009 Feb 13;102(6):068103. doi: 10.1103/PhysRevLett.102.068103.
10
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反应性卟啉分子运动的光谱鉴定。

Spectroscopic identification of reactive porphyrin motions.

机构信息

Department of Physics and Center for Interdisciplinary Research on Complex Systems, Northeastern University, Boston, Massachusetts 02115, USA.

出版信息

J Chem Phys. 2011 Jul 7;135(1):015101. doi: 10.1063/1.3598473.

DOI:10.1063/1.3598473
PMID:21744919
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3144962/
Abstract

Nuclear resonance vibrational spectroscopy (NRVS) reveals the vibrational dynamics of a Mössbauer probe nucleus. Here, (57)Fe NRVS measurements yield the complete spectrum of Fe vibrations in halide complexes of iron porphyrins. Iron porphine serves as a useful symmetric model for the more complex spectrum of asymmetric heme molecules that contribute to numerous essential biological processes. Quantitative comparison with the vibrational density of states (VDOS) predicted for the Fe atom by density functional theory calculations unambiguously identifies the correct sextet ground state in each case. These experimentally authenticated calculations then provide detailed normal mode descriptions for each observed vibration. All Fe-ligand vibrations are clearly identified despite the high symmetry of the Fe environment. Low frequency molecular distortions and acoustic lattice modes also contribute to the experimental signal. Correlation matrices compare vibrations between different molecules and yield a detailed picture of how heme vibrations evolve in response to (a) halide binding and (b) asymmetric placement of porphyrin side chains. The side chains strongly influence the energetics of heme doming motions that control Fe reactivity, which are easily observed in the experimental signal.

摘要

核共振振动光谱(NRVS)揭示了穆斯堡尔探针原子核的振动动力学。在这里,(57)Fe NRVS 测量给出了铁卟啉卤化物配合物中 Fe 振动的完整光谱。铁卟啉是不对称血红素分子更复杂光谱的有用对称模型,血红素分子参与了许多重要的生物过程。与密度泛函理论计算预测的 Fe 原子振动态密度(VDOS)的定量比较,明确确定了每种情况下正确的 sextet 基态。这些经过实验验证的计算然后为每个观察到的振动提供了详细的正则模态描述。尽管 Fe 环境的对称性很高,但所有 Fe-配体振动都能被清晰识别。低频分子变形和声学晶格模式也为实验信号做出了贡献。相关矩阵比较了不同分子之间的振动,并详细描述了血红素振动如何响应(a)卤化物结合和(b)卟啉侧链的不对称排列而发生变化。侧链强烈影响控制 Fe 反应性的血红素成拱运动的能量学,这在实验信号中很容易观察到。