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磷酸传递的反应动力学表明了它们在细胞信号传递中的潜在应用。

Response dynamics of phosphorelays suggest their potential utility in cell signalling.

机构信息

Microsoft Research-University of Trento Centre for Computational and Systems Biology (CoSBi), Povo (Trento), Italy.

出版信息

J R Soc Interface. 2011 Apr 6;8(57):480-8. doi: 10.1098/rsif.2010.0336. Epub 2010 Aug 11.

Abstract

Phosphorelays are extended two-component signalling systems found in diverse bacteria, lower eukaryotes and plants. Only few of these systems are characterized, and we still lack a full understanding of their signalling abilities. Here, we aim to achieve a global understanding of phosphorelay signalling and its dynamical properties. We develop a generic model, allowing us to systematically analyse response dynamics under different assumptions. Using this model, we find that the steady-state concentration of phosphorylated protein at the final layer of a phosphorelay is a linearly increasing, but eventually saturating function of the input. In contrast, the intermediate layers can display ultrasensitivity. We find that such ultrasensitivity is a direct result of the phosphorelay biochemistry; shuttling of a single phosphate group from the first to the last layer. The response dynamics of the phosphorelay results in tolerance of cross-talk, especially when it occurs as cross-deactivation. Further, it leads to a high signal-to-noise ratio for the final layer. We find that a relay length of four, which is most commonly observed, acts as a saturating point for these dynamic properties. These findings suggest that phosphorelays could act as a mechanism to reduce noise and effects of cross-talk on the final layer of the relay and enforce its input-response relation to be linear. In addition, our analysis suggests that middle layers of phosphorelays could embed thresholds. We discuss the consequence of these findings in relation to why cells might use phosphorelays along with enzymatic kinase cascades.

摘要

磷酸传递是一种广泛存在于细菌、低等真核生物和植物中的双组分信号系统。尽管已经有少数磷酸传递系统被表征,但我们仍然缺乏对其信号传递能力的全面理解。在这里,我们旨在实现对磷酸传递信号及其动态特性的全面理解。我们开发了一个通用模型,允许我们根据不同的假设系统地分析响应动力学。使用这个模型,我们发现磷酸传递系统的最终层中磷酸化蛋白的稳态浓度是输入的线性增加但最终饱和的函数。相比之下,中间层可以显示出超敏性。我们发现这种超敏性是磷酸传递生物化学的直接结果;即单个磷酸基团从第一层到最后一层的传递。磷酸传递的响应动力学导致了交叉对话的容忍度,特别是当交叉失活发生时。此外,它为最终层提供了高的信噪比。我们发现,最常见的四级磷酸传递作为这些动态特性的饱和点。这些发现表明,磷酸传递系统可以作为一种机制来减少噪声和交叉对话对传递系统最终层的影响,并加强其输入-响应关系的线性。此外,我们的分析表明,磷酸传递系统的中间层可以嵌入阈值。我们将讨论这些发现与细胞为什么可能同时使用磷酸传递系统和酶激酶级联的关系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/697a/3061117/33ee40b90eae/rsif20100336-g1.jpg

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