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印度希瓦氏菌,从阿拉伯海的沉积物中分离得到。

Shewanella indica sp. nov., isolated from sediment of the Arabian Sea.

机构信息

Molecular Biology Unit, National Centre for Cell Science, University of Pune, Pune 411 007, Maharashtra, India.

Department of Biology, College of Life Science and Natural Resources, Sunchon National University, Suncheon 540-742, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2011 Sep;61(Pt 9):2058-2064. doi: 10.1099/ijs.0.026310-0. Epub 2010 Sep 17.

Abstract

A Gram-negative, facultatively anaerobic, rod-shaped, catalase- and oxidase-positive bacterium, motile by means of a single polar flagellum and designated strain KJW27(T), was isolated from the marine sediment of Karwar jetty, west coast of India. The strain was β-haemolytic and grew with 0-10 % (w/v) NaCl, at 10-45 °C and at pH 6.5-10, with optimum growth with 2 % (w/v) NaCl, at 37 °C and at pH 7.5. The major fatty acids were iso-C₁₅:₀ (22.2 %), C₁₇:₁ω8c (21 %), summed feature 3 (comprising C₁₆:₁ω7c and/or C₁₆:₁ω6c; 10.2 %), C₁₆:₀ (7.1 %), iso-C₁₃:₀ (5.6 %) and C₁₇:₀ (4.4 %). The DNA G+C content was 51.2 mol%. Phylogenetic analysis based on 16S rRNA and gyrB gene sequences showed that strain KJW27(T) forms a lineage within the genus Shewanella and is closely related to Shewanella algae ATCC 51192(T) (98.8 %), Shewanella haliotis DW01(T) (98.8 %) and Shewanella chilikensis JC5(T) (98.2 %). Sequence identity with other members of this genus ranges from 92.2 to 96.4 %. The DNA-DNA relatedness of strain KJW27(T) with S. algae ATCC 51192(T), S. haliotis DW01(T) and S. chilikensis JC5(T) was 52, 44 and 33 %, respectively. The phenotypic, genotypic and DNA-DNA relatedness data indicate that strain KJW27(T) should be distinguished from S. algae ATCC 51192(T), S. haliotis DW01(T) and S. chilikensis JC5(T). On the basis of the data presented in this study, strain KJW27(T) represents a novel species, for which the name Shewanella indica sp. nov. is proposed. The type strain is KJW27(T) ( = KCTC 23171(T)  = BCC 41031(T)  = NCIM 5388(T)).

摘要

一株革兰氏阴性、兼性厌氧、杆状、过氧化氢酶和氧化酶阳性、通过单一极鞭毛运动的细菌,被命名为 KJW27(T) 菌株,从印度西海岸卡瓦尔码头的海洋沉积物中分离得到。该菌株为 β-溶血,可在 0-10%(w/v)NaCl、10-45°C 和 pH6.5-10 的条件下生长,在 2%(w/v)NaCl、37°C 和 pH7.5 的条件下生长最佳。主要脂肪酸为 iso-C₁₅:₀(22.2%)、C₁₇:₁ω8c(21%)、summed feature 3(由 C₁₆:₁ω7c 和/或 C₁₆:₁ω6c 组成;10.2%)、C₁₆:₀(7.1%)、iso-C₁₃:₀(5.6%)和 C₁₇:₀(4.4%)。DNA G+C 含量为 51.2mol%。基于 16S rRNA 和 gyrB 基因序列的系统发育分析表明,菌株 KJW27(T) 在希瓦氏菌属内形成一个分支,与希瓦氏菌属的 Shewanella algae ATCC 51192(T)(98.8%)、Shewanella haliotis DW01(T)(98.8%)和 Shewanella chilikensis JC5(T)(98.2%)密切相关。与该属其他成员的序列同一性范围为 92.2%至 96.4%。菌株 KJW27(T)与 S. algae ATCC 51192(T)、S. haliotis DW01(T)和 S. chilikensis JC5(T)的 DNA-DNA 相关性分别为 52%、44%和 33%。表型、基因型和 DNA-DNA 相关性数据表明,菌株 KJW27(T)应与 S. algae ATCC 51192(T)、S. haliotis DW01(T)和 S. chilikensis JC5(T)区分开来。基于本研究提供的数据,菌株 KJW27(T)代表一种新的物种,建议将其命名为 Shewanella indica sp. nov.。模式菌株为 KJW27(T)(=KCTC 23171(T)=BCC 41031(T)=NCIM 5388(T))。

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