School of Life Sciences, Research Institute for Ulleungdo and Dokdo Islands, Kyungpook National University, Daegu 702-701, Republic of Korea.
Korea Research Institute of Bioscience and Biotechnology (KRIBB), PO Box 115, Yusong, Daejeon 306-809, Republic of Korea.
Int J Syst Evol Microbiol. 2012 Jul;62(Pt 7):1636-1643. doi: 10.1099/ijs.0.032995-0. Epub 2011 Sep 2.
A novel bacterial strain, designated UDC329(T), was isolated from a sample of seawater collected at Dong-do, on the coast of Dokdo Island, in the East Sea of the Republic of Korea. The Gram-staining-negative, motile, facultatively anaerobic, non-spore-forming rods of the strain developed into dark orange-yellow colonies. The strain grew optimally between 25 and 30 °C, with 1% (w/v) NaCl and at pH 7. It grew in the absence of NaCl, but not with NaCl at >7% (w/v). The predominant menaquinone was MK-7, the predominant ubiquinones were Q-7 and Q-8, and the major fatty acids were iso-C(15:0) (33.52%) and C(17:1)ω8c (11.73%). The genomic DNA G+C content of strain UDC329(T) was 50.2 mol%. In phylogenetic analyses based on 16S rRNA and gyrB gene sequences, strain UDC329(T) was grouped with members of the genus Shewanella and appeared most closely related to Shewanella fodinae JC15(T) (97.9% 16S rRNA gene sequence similarity), Shewanella indica KJW27(T) (95.0%), Shewanella algae ATCC 51192(T) (94.8%), Shewanella haliotis DW01(T) (94.5%) and Shewanella chilikensis JC5(T) (93.9%). The level of DNA-DNA relatedness between strain UDC329(T) and S. fodinae JC15(T) was, however, only 27.4%. On the basis of phenotypic, genotypic and DNA-DNA relatedness data, strain UDC329(T) represents a novel species in the genus Shewanella, for which the name Shewanella dokdonensis sp. nov. is proposed. The type strain is UDC329(T) (=KCTC 22898(T)=DSM 23626(T)).
一株新的细菌菌株,命名为 UDC329(T),从韩国东海独岛(Dokdo)海岸采集的海水样本中分离得到。该菌株的革兰氏阴性、运动、兼性厌氧、非孢子形成的棒状细胞发育成深橙色-黄色菌落。该菌株在 25 到 30°C 之间最佳生长,在 1%(w/v)NaCl 和 pH7 下生长。它可以在没有 NaCl 的情况下生长,但不能在 >7%(w/v)的 NaCl 中生长。主要的类异戊二烯醌是 MK-7,主要的泛醌是 Q-7 和 Q-8,主要的脂肪酸是 iso-C(15:0)(33.52%)和 C(17:1)ω8c(11.73%)。菌株 UDC329(T)的基因组 DNA G+C 含量为 50.2mol%。基于 16S rRNA 和 gyrB 基因序列的系统发育分析,菌株 UDC329(T)与希瓦氏菌属的成员聚在一起,与 Shewanella fodinae JC15(T)(97.9%的 16S rRNA 基因序列相似性)最为密切相关,其次是 Shewanella indica KJW27(T)(95.0%)、Shewanella algae ATCC 51192(T)(94.8%)、Shewanella haliotis DW01(T)(94.5%)和 Shewanella chilikensis JC5(T)(93.9%)。然而,菌株 UDC329(T)与 S. fodinae JC15(T)之间的 DNA-DNA 同源性水平仅为 27.4%。基于表型、基因型和 DNA-DNA 同源性数据,菌株 UDC329(T)代表希瓦氏菌属的一个新种,建议将其命名为 Shewanella dokdonensis sp. nov.。模式菌株为 UDC329(T)(=KCTC 22898(T)=DSM 23626(T))。