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氟化蛋白表面的水动力学。

Hydration dynamics at fluorinated protein surfaces.

机构信息

Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA 91125, USA.

出版信息

Proc Natl Acad Sci U S A. 2010 Oct 5;107(40):17101-6. doi: 10.1073/pnas.1011569107. Epub 2010 Sep 20.

Abstract

Water-protein interactions dictate many processes crucial to protein function including folding, dynamics, interactions with other biomolecules, and enzymatic catalysis. Here we examine the effect of surface fluorination on water-protein interactions. Modification of designed coiled-coil proteins by incorporation of 5,5,5-trifluoroleucine or (4S)-2-amino-4-methylhexanoic acid enables systematic examination of the effects of side-chain volume and fluorination on solvation dynamics. Using ultrafast fluorescence spectroscopy, we find that fluorinated side chains exert electrostatic drag on neighboring water molecules, slowing water motion at the protein surface.

摘要

水-蛋白质相互作用决定了许多对蛋白质功能至关重要的过程,包括折叠、动力学、与其他生物分子的相互作用以及酶催化。在这里,我们研究了表面氟化对水-蛋白质相互作用的影响。通过在设计的螺旋蛋白中掺入 5,5,5-三氟亮氨酸或(4S)-2-氨基-4-甲基己酸来修饰,可以系统地研究侧链体积和氟化对溶剂化动力学的影响。使用超快荧光光谱法,我们发现氟化侧链对相邻水分子施加静电力拖曳,从而减慢蛋白质表面的水分子运动。

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本文引用的文献

1
Fluorinated Coiled-Coil Proteins Prepared In Vivo Display Enhanced Thermal and Chemical Stability.
Angew Chem Int Ed Engl. 2001 Apr 17;40(8):1494-1496. doi: 10.1002/1521-3773(20010417)40:8<1494::AID-ANIE1494>3.0.CO;2-X.
2
Molecular origins of fluorocarbon hydrophobicity.
Proc Natl Acad Sci U S A. 2010 Aug 3;107(31):13603-7. doi: 10.1073/pnas.0915169107. Epub 2010 Jul 19.
3
On the origin of the hydrophobic water gap: An X-ray reflectivity and MD simulation study.
J Am Chem Soc. 2010 May 19;132(19):6735-41. doi: 10.1021/ja910624j.
4
Quasi-static self-quenching of Trp-X and X-Trp dipeptides in water: ultrafast fluorescence decay.
J Phys Chem B. 2009 Sep 3;113(35):12084-9. doi: 10.1021/jp903078x.
5
Protein hydration dynamics and molecular mechanism of coupled water-protein fluctuations.
J Am Chem Soc. 2009 Aug 5;131(30):10677-91. doi: 10.1021/ja902918p.
7
Integration or segregation: how do molecules behave at oil/water interfaces?
Acc Chem Res. 2008 Jun;41(6):739-48. doi: 10.1021/ar7002732.
8
K2D2: estimation of protein secondary structure from circular dichroism spectra.
BMC Struct Biol. 2008 May 13;8:25. doi: 10.1186/1472-6807-8-25.
9
Fluorine in pharmaceuticals: looking beyond intuition.
Science. 2007 Sep 28;317(5846):1881-6. doi: 10.1126/science.1131943.
10
Dehydration-driven solvent exposure of hydrophobic surfaces as a driving force in peptide folding.
Proc Natl Acad Sci U S A. 2007 Sep 25;104(39):15230-5. doi: 10.1073/pnas.0701401104. Epub 2007 Sep 19.

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