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一种使用混合模型模拟实体肿瘤生长的自适应多重网格算法。

An Adaptive Multigrid Algorithm for Simulating Solid Tumor Growth Using Mixture Models.

作者信息

Wise S M, Lowengrub J S, Cristini V

机构信息

Mathematics Department, University of Tennessee, Knoxville, TN 37996-1300, USA.

出版信息

Math Comput Model. 2011 Jan 1;53(1-2):1-20. doi: 10.1016/j.mcm.2010.07.007.

DOI:10.1016/j.mcm.2010.07.007
PMID:21076663
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2976552/
Abstract

In this paper we give the details of the numerical solution of a three-dimensional multispecies diffuse interface model of tumor growth, which was derived in (Wise et al., J. Theor. Biol. 253 (2008)) and used to study the development of glioma in (Frieboes et al., NeuroImage 37 (2007) and tumor invasion in (Bearer et al., Cancer Research, 69 (2009)) and (Frieboes et al., J. Theor. Biol. 264 (2010)). The model has a thermodynamic basis, is related to recently developed mixture models, and is capable of providing a detailed description of tumor progression. It utilizes a diffuse interface approach, whereby sharp tumor boundaries are replaced by narrow transition layers that arise due to differential adhesive forces among the cell-species. The model consists of fourth-order nonlinear advection-reaction-diffusion equations (of Cahn-Hilliard-type) for the cell-species coupled with reaction-diffusion equations for the substrate components. Numerical solution of the model is challenging because the equations are coupled, highly nonlinear, and numerically stiff. In this paper we describe a fully adaptive, nonlinear multigrid/finite difference method for efficiently solving the equations. We demonstrate the convergence of the algorithm and we present simulations of tumor growth in 2D and 3D that demonstrate the capabilities of the algorithm in accurately and efficiently simulating the progression of tumors with complex morphologies.

摘要

在本文中,我们详细给出了肿瘤生长三维多物种扩散界面模型的数值解,该模型在(怀斯等人,《理论生物学杂志》253卷(2008年))中被推导出来,并被用于(弗里博斯等人,《神经影像学》37卷(2007年))中研究神经胶质瘤的发展,以及在(贝尔等人,《癌症研究》,69卷(2009年))和(弗里博斯等人,《理论生物学杂志》264卷(2010年))中研究肿瘤侵袭。该模型具有热力学基础,与最近开发的混合模型相关,并且能够提供肿瘤进展的详细描述。它采用了扩散界面方法,即尖锐的肿瘤边界被由于细胞物种间的差异粘附力而产生的狭窄过渡层所取代。该模型由用于细胞物种的四阶非线性对流 - 反应 - 扩散方程(Cahn - Hilliard型)与用于底物成分的反应 - 扩散方程耦合而成。该模型的数值解具有挑战性,因为这些方程是耦合的、高度非线性的且数值刚性大。在本文中,我们描述了一种用于有效求解这些方程的完全自适应非线性多重网格/有限差分方法。我们证明了该算法的收敛性,并给出了二维和三维肿瘤生长的模拟结果,这些结果展示了该算法在准确且高效地模拟具有复杂形态的肿瘤进展方面的能力。

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本文引用的文献

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A New Ghost Cell/Level Set Method for Moving Boundary Problems: Application to Tumor Growth.一种用于移动边界问题的新型幽灵单元/水平集方法:在肿瘤生长中的应用。
J Sci Comput. 2008 Jun 1;35(2-3):266-299. doi: 10.1007/s10915-008-9190-z.
2
Nonlinear modelling of cancer: bridging the gap between cells and tumours.癌症的非线性建模:弥合细胞与肿瘤之间的差距。
Nonlinearity. 2010;23(1):R1-R9. doi: 10.1088/0951-7715/23/1/r01.
3
A single-cell approach in modeling the dynamics of tumor microregions.单细胞方法在肿瘤微区动力学建模中的应用。
PLoS Comput Biol. 2022 May 6;18(5):e1010039. doi: 10.1371/journal.pcbi.1010039. eCollection 2022 May.
4
Simulation of 3D centimeter-scale continuum tumor growth at sub-millimeter resolution via distributed computing.通过分布式计算模拟亚毫米分辨率下三维厘米级连续肿瘤生长。
Comput Biol Med. 2021 Jul;134:104507. doi: 10.1016/j.compbiomed.2021.104507. Epub 2021 May 21.
5
A Visually Apparent and Quantifiable CT Imaging Feature Identifies Biophysical Subtypes of Pancreatic Ductal Adenocarcinoma.一种可见且可量化的 CT 成像特征可识别胰腺导管腺癌的生物物理亚型。
Clin Cancer Res. 2018 Dec 1;24(23):5883-5894. doi: 10.1158/1078-0432.CCR-17-3668. Epub 2018 Aug 6.
6
Simulation of Multispecies Desmoplastic Cancer Growth via a Fully Adaptive Non-linear Full Multigrid Algorithm.通过完全自适应非线性全多重网格算法对多物种促结缔组织增生性癌生长进行模拟。
Front Physiol. 2018 Jul 12;9:821. doi: 10.3389/fphys.2018.00821. eCollection 2018.
7
Activation of the HGF/c-Met axis in the tumor microenvironment: A multispecies model.肿瘤微环境中HGF/c-Met轴的激活:一种多物种模型。
J Theor Biol. 2018 Feb 14;439:86-99. doi: 10.1016/j.jtbi.2017.11.025. Epub 2017 Dec 5.
8
Three-Dimensional Spatiotemporal Modeling of Colon Cancer Organoids Reveals that Multimodal Control of Stem Cell Self-Renewal is a Critical Determinant of Size and Shape in Early Stages of Tumor Growth.三维时空建模的结肠癌类器官揭示了多模式控制干细胞自我更新是肿瘤生长早期大小和形状的关键决定因素。
Bull Math Biol. 2018 May;80(5):1404-1433. doi: 10.1007/s11538-017-0294-1. Epub 2017 Jul 5.
9
Model of vascular desmoplastic multispecies tumor growth.血管促结缔组织增生性多物种肿瘤生长模型
J Theor Biol. 2017 Oct 7;430:245-282. doi: 10.1016/j.jtbi.2017.05.013. Epub 2017 May 18.
10
Progress Towards Computational 3-D Multicellular Systems Biology.计算三维多细胞系统生物学的进展
Adv Exp Med Biol. 2016;936:225-246. doi: 10.1007/978-3-319-42023-3_12.
Math Biosci Eng. 2005 Jul;2(3):643-55. doi: 10.3934/mbe.2005.2.643.
4
The ecology and evolutionary biology of cancer: a review of mathematical models of necrosis and tumor cell diversity.癌症的生态学和进化生物学:坏死和肿瘤细胞多样性的数学模型综述。
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5
Three-dimensional multispecies nonlinear tumor growth-II: Tumor invasion and angiogenesis.三维多物种非线性肿瘤生长-II:肿瘤侵袭和血管生成。
J Theor Biol. 2010 Jun 21;264(4):1254-78. doi: 10.1016/j.jtbi.2010.02.036. Epub 2010 Mar 18.
6
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Nat Clin Pract Oncol. 2009 Jan;6(1):34-42. doi: 10.1038/ncponc1237. Epub 2008 Oct 14.